Results 41 - 60 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15850 | 5' | -58 | NC_004065.1 | + | 135560 | 0.66 | 0.926767 |
Target: 5'- gGCGGACGacgGGGaGgcGGCCGUCa-- -3' miRNA: 3'- aCGCCUGCa--CCUgCuaCCGGUAGcgc -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 133886 | 0.66 | 0.91617 |
Target: 5'- cGcCGGGCG-GaACGAcgGGCCAcccUCGCGg -3' miRNA: 3'- aC-GCCUGCaCcUGCUa-CCGGU---AGCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 132358 | 0.69 | 0.776229 |
Target: 5'- uUGUGGAgGcGGuagcACGGgcaGGCCGUCGCGu -3' miRNA: 3'- -ACGCCUgCaCC----UGCUa--CCGGUAGCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 132158 | 0.68 | 0.835163 |
Target: 5'- aGCcuGGACGUGGugGc-GGCgAUgGCGg -3' miRNA: 3'- aCG--CCUGCACCugCuaCCGgUAgCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 130143 | 0.71 | 0.673086 |
Target: 5'- gGCGaGAgGaaGGACGA-GGCCGUCGCu -3' miRNA: 3'- aCGC-CUgCa-CCUGCUaCCGGUAGCGc -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 127204 | 0.66 | 0.904112 |
Target: 5'- cGgGGACGUGGuucgggaGCGgcGGCCGcgaggaucgggCGCGg -3' miRNA: 3'- aCgCCUGCACC-------UGCuaCCGGUa----------GCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 124818 | 0.66 | 0.925233 |
Target: 5'- cGcCGGGCGUccACGAacagcggcuccgccUGGuCCAUCGCGa -3' miRNA: 3'- aC-GCCUGCAccUGCU--------------ACC-GGUAGCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 124313 | 0.68 | 0.827193 |
Target: 5'- cGCGGAUGUcGugGuucGCCGUCGCc -3' miRNA: 3'- aCGCCUGCAcCugCuacCGGUAGCGc -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 119531 | 0.77 | 0.356989 |
Target: 5'- cGgGGACGUGGuCGAgGGCCAggGCGa -3' miRNA: 3'- aCgCCUGCACCuGCUaCCGGUagCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 115608 | 0.66 | 0.904708 |
Target: 5'- aUGUGGGg--GGAUGAUGGCUGUCuucagGCGg -3' miRNA: 3'- -ACGCCUgcaCCUGCUACCGGUAG-----CGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 111915 | 0.68 | 0.842193 |
Target: 5'- cGCGcGGCGacgagagacgccaUGGGCGcc-GCCGUCGCGg -3' miRNA: 3'- aCGC-CUGC-------------ACCUGCuacCGGUAGCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 107803 | 0.66 | 0.926767 |
Target: 5'- -uUGGcCGUGGGCGAgcgGGCCAccaGCc -3' miRNA: 3'- acGCCuGCACCUGCUa--CCGGUag-CGc -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 107092 | 0.68 | 0.835163 |
Target: 5'- cGgGGACGUGGG-GAa-GCUGUCGCGg -3' miRNA: 3'- aCgCCUGCACCUgCUacCGGUAGCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 105228 | 0.72 | 0.643879 |
Target: 5'- gGCGGACGUcGGACGAggagaUGGUgG-CGCa -3' miRNA: 3'- aCGCCUGCA-CCUGCU-----ACCGgUaGCGc -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 105170 | 0.69 | 0.802341 |
Target: 5'- -uCGGACGUGGcgcggaugaucGCGAUGGaCCAg-GCGg -3' miRNA: 3'- acGCCUGCACC-----------UGCUACC-GGUagCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 103082 | 0.67 | 0.872374 |
Target: 5'- gGCGu-CGUGaaGAUGAucuUGGCCAUCGCc -3' miRNA: 3'- aCGCcuGCAC--CUGCU---ACCGGUAGCGc -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 102098 | 0.72 | 0.634116 |
Target: 5'- cGCGGGCG---GCGAUGGCCGgaccgaggugCGCGg -3' miRNA: 3'- aCGCCUGCaccUGCUACCGGUa---------GCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 100578 | 0.71 | 0.702018 |
Target: 5'- aGCGcGACGccGGAgaccuuagguaUGAUGGCgGUCGCGg -3' miRNA: 3'- aCGC-CUGCa-CCU-----------GCUACCGgUAGCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 99384 | 0.67 | 0.858041 |
Target: 5'- aUGaCGGGCGUGGGCugccuggcgGcgGGCgCGUUGCu -3' miRNA: 3'- -AC-GCCUGCACCUG---------CuaCCG-GUAGCGc -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 96745 | 0.76 | 0.426672 |
Target: 5'- cGCGGGCGaGGGCGAgcagGGCgacggcggaggcggCAUCGCGg -3' miRNA: 3'- aCGCCUGCaCCUGCUa---CCG--------------GUAGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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