miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15850 5' -58 NC_004065.1 + 124313 0.68 0.827193
Target:  5'- cGCGGAUGUcGugGuucGCCGUCGCc -3'
miRNA:   3'- aCGCCUGCAcCugCuacCGGUAGCGc -5'
15850 5' -58 NC_004065.1 + 200790 0.68 0.819062
Target:  5'- gGCGGugGcGGGCGAcGGCgucucggCGCGg -3'
miRNA:   3'- aCGCCugCaCCUGCUaCCGgua----GCGC- -5'
15850 5' -58 NC_004065.1 + 19923 0.72 0.634117
Target:  5'- aGCGGugGUGG-CGGUGGUUA-CGaCGg -3'
miRNA:   3'- aCGCCugCACCuGCUACCGGUaGC-GC- -5'
15850 5' -58 NC_004065.1 + 196195 0.72 0.595122
Target:  5'- cGCGcacGGCGUGGuuGAUGGCCAgcuugucCGCGu -3'
miRNA:   3'- aCGC---CUGCACCugCUACCGGUa------GCGC- -5'
15850 5' -58 NC_004065.1 + 200867 0.73 0.585418
Target:  5'- cGgGGGCGcGGGCGGUGGCgaAUCGuCGg -3'
miRNA:   3'- aCgCCUGCaCCUGCUACCGg-UAGC-GC- -5'
15850 5' -58 NC_004065.1 + 201847 0.73 0.56611
Target:  5'- uUGCGGuACGUGGACaGAUGGCgguucagGUCGUa -3'
miRNA:   3'- -ACGCC-UGCACCUG-CUACCGg------UAGCGc -5'
15850 5' -58 NC_004065.1 + 138990 0.74 0.50936
Target:  5'- cGCGGugcuACGagcucgGGACGGUGGCCAUggacCGCGu -3'
miRNA:   3'- aCGCC----UGCa-----CCUGCUACCGGUA----GCGC- -5'
15850 5' -58 NC_004065.1 + 96745 0.76 0.426672
Target:  5'- cGCGGGCGaGGGCGAgcagGGCgacggcggaggcggCAUCGCGg -3'
miRNA:   3'- aCGCCUGCaCCUGCUa---CCG--------------GUAGCGC- -5'
15850 5' -58 NC_004065.1 + 56624 0.77 0.356989
Target:  5'- cGCGGAUGUGGauGCGGUGGCagcggcCGCGg -3'
miRNA:   3'- aCGCCUGCACC--UGCUACCGgua---GCGC- -5'
15850 5' -58 NC_004065.1 + 119531 0.77 0.356989
Target:  5'- cGgGGACGUGGuCGAgGGCCAggGCGa -3'
miRNA:   3'- aCgCCUGCACCuGCUaCCGGUagCGC- -5'
15850 5' -58 NC_004065.1 + 130143 0.71 0.673086
Target:  5'- gGCGaGAgGaaGGACGA-GGCCGUCGCu -3'
miRNA:   3'- aCGC-CUgCa-CCUGCUaCCGGUAGCGc -5'
15850 5' -58 NC_004065.1 + 75472 0.71 0.692417
Target:  5'- aGCaGGACGaGGGCGAUGGCgGcgGCGa -3'
miRNA:   3'- aCG-CCUGCaCCUGCUACCGgUagCGC- -5'
15850 5' -58 NC_004065.1 + 68035 0.69 0.802341
Target:  5'- cGUGGACGUGGGCcGccagcugcUGGCgCA-CGCGa -3'
miRNA:   3'- aCGCCUGCACCUGcU--------ACCG-GUaGCGC- -5'
15850 5' -58 NC_004065.1 + 23616 0.69 0.7903
Target:  5'- gGCGGGCaggcggGUGGACGGgcggcuggccucgGGCCGaCGCa -3'
miRNA:   3'- aCGCCUG------CACCUGCUa------------CCGGUaGCGc -5'
15850 5' -58 NC_004065.1 + 200568 0.69 0.776229
Target:  5'- aGCGGgaacACG-GGugGAgaagGGUgGUCGCGg -3'
miRNA:   3'- aCGCC----UGCaCCugCUa---CCGgUAGCGC- -5'
15850 5' -58 NC_004065.1 + 132358 0.69 0.776229
Target:  5'- uUGUGGAgGcGGuagcACGGgcaGGCCGUCGCGu -3'
miRNA:   3'- -ACGCCUgCaCC----UGCUa--CCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 68141 0.69 0.776229
Target:  5'- cUGuCGGACGagcUGGACGc-GGUgAUCGCGg -3'
miRNA:   3'- -AC-GCCUGC---ACCUGCuaCCGgUAGCGC- -5'
15850 5' -58 NC_004065.1 + 194064 0.69 0.76728
Target:  5'- cGCGGACGUaacGACGAUaGaaGUCGCGg -3'
miRNA:   3'- aCGCCUGCAc--CUGCUAcCggUAGCGC- -5'
15850 5' -58 NC_004065.1 + 48094 0.7 0.758221
Target:  5'- cGCGGACcUGuGGCGgcGGCgGUgGCGg -3'
miRNA:   3'- aCGCCUGcAC-CUGCuaCCGgUAgCGC- -5'
15850 5' -58 NC_004065.1 + 62380 0.7 0.749061
Target:  5'- gGCGGGgGUGGugGcggcggggGUGGCgGcCGCGg -3'
miRNA:   3'- aCGCCUgCACCugC--------UACCGgUaGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.