miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15850 5' -58 NC_004065.1 + 48094 0.7 0.758221
Target:  5'- cGCGGACcUGuGGCGgcGGCgGUgGCGg -3'
miRNA:   3'- aCGCCUGcAC-CUGCuaCCGgUAgCGC- -5'
15850 5' -58 NC_004065.1 + 194064 0.69 0.76728
Target:  5'- cGCGGACGUaacGACGAUaGaaGUCGCGg -3'
miRNA:   3'- aCGCCUGCAc--CUGCUAcCggUAGCGC- -5'
15850 5' -58 NC_004065.1 + 188257 0.67 0.858041
Target:  5'- gGCGGACagGUcGGCGGucaucuUGGCCAcccUCGCGu -3'
miRNA:   3'- aCGCCUG--CAcCUGCU------ACCGGU---AGCGC- -5'
15850 5' -58 NC_004065.1 + 32951 0.67 0.858041
Target:  5'- cGCGGAUGcGGGCGucga-CGUCGCGg -3'
miRNA:   3'- aCGCCUGCaCCUGCuaccgGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 77200 0.67 0.856566
Target:  5'- gUGCGcGGCGgcgccccgcacGGCGAUGGCCA-CGCu -3'
miRNA:   3'- -ACGC-CUGCac---------CUGCUACCGGUaGCGc -5'
15850 5' -58 NC_004065.1 + 182506 0.68 0.842966
Target:  5'- gGCGGugGUcccaauagGGGCGGUGGUCccaaucaagAUgGCGg -3'
miRNA:   3'- aCGCCugCA--------CCUGCUACCGG---------UAgCGC- -5'
15850 5' -58 NC_004065.1 + 124313 0.68 0.827193
Target:  5'- cGCGGAUGUcGugGuucGCCGUCGCc -3'
miRNA:   3'- aCGCCUGCAcCugCuacCGGUAGCGc -5'
15850 5' -58 NC_004065.1 + 200790 0.68 0.819062
Target:  5'- gGCGGugGcGGGCGAcGGCgucucggCGCGg -3'
miRNA:   3'- aCGCCugCaCCUGCUaCCGgua----GCGC- -5'
15850 5' -58 NC_004065.1 + 68035 0.69 0.802341
Target:  5'- cGUGGACGUGGGCcGccagcugcUGGCgCA-CGCGa -3'
miRNA:   3'- aCGCCUGCACCUGcU--------ACCG-GUaGCGC- -5'
15850 5' -58 NC_004065.1 + 23616 0.69 0.7903
Target:  5'- gGCGGGCaggcggGUGGACGGgcggcuggccucgGGCCGaCGCa -3'
miRNA:   3'- aCGCCUG------CACCUGCUa------------CCGGUaGCGc -5'
15850 5' -58 NC_004065.1 + 200568 0.69 0.776229
Target:  5'- aGCGGgaacACG-GGugGAgaagGGUgGUCGCGg -3'
miRNA:   3'- aCGCC----UGCaCCugCUa---CCGgUAGCGC- -5'
15850 5' -58 NC_004065.1 + 132358 0.69 0.776229
Target:  5'- uUGUGGAgGcGGuagcACGGgcaGGCCGUCGCGu -3'
miRNA:   3'- -ACGCCUgCaCC----UGCUa--CCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 68141 0.69 0.776229
Target:  5'- cUGuCGGACGagcUGGACGc-GGUgAUCGCGg -3'
miRNA:   3'- -AC-GCCUGC---ACCUGCuaCCGgUAGCGC- -5'
15850 5' -58 NC_004065.1 + 105228 0.72 0.643879
Target:  5'- gGCGGACGUcGGACGAggagaUGGUgG-CGCa -3'
miRNA:   3'- aCGCCUGCA-CCUGCU-----ACCGgUaGCGc -5'
15850 5' -58 NC_004065.1 + 169151 0.72 0.634116
Target:  5'- gGCGGgaauACGaGGGCcuGAUGGCCuUCGCGg -3'
miRNA:   3'- aCGCC----UGCaCCUG--CUACCGGuAGCGC- -5'
15850 5' -58 NC_004065.1 + 102098 0.72 0.634116
Target:  5'- cGCGGGCG---GCGAUGGCCGgaccgaggugCGCGg -3'
miRNA:   3'- aCGCCUGCaccUGCUACCGGUa---------GCGC- -5'
15850 5' -58 NC_004065.1 + 637 0.73 0.585418
Target:  5'- gGCGGAUGUGGGUGAgugcguccGGCCG-CGCGu -3'
miRNA:   3'- aCGCCUGCACCUGCUa-------CCGGUaGCGC- -5'
15850 5' -58 NC_004065.1 + 143900 0.74 0.500123
Target:  5'- cGCGGACG-GGACGGUGGUgcccaGCGa -3'
miRNA:   3'- aCGCCUGCaCCUGCUACCGguag-CGC- -5'
15850 5' -58 NC_004065.1 + 33804 0.8 0.262539
Target:  5'- aUGCGGACGUgGGACGAcgcggacaagcUGGCCAUCa-- -3'
miRNA:   3'- -ACGCCUGCA-CCUGCU-----------ACCGGUAGcgc -5'
15850 5' -58 NC_004065.1 + 33974 0.66 0.921577
Target:  5'- -aCGGGCcccGACGAUGGCUcgCGCu -3'
miRNA:   3'- acGCCUGcacCUGCUACCGGuaGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.