miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15850 5' -58 NC_004065.1 + 84885 1.08 0.00381
Target:  5'- cUGCGGACGUGGACGAUGGCCAUCGCGu -3'
miRNA:   3'- -ACGCCUGCACCUGCUACCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 33615 0.69 0.78506
Target:  5'- cUGCGGGCc-GGcAUGGccaaGGCCAUCGCGu -3'
miRNA:   3'- -ACGCCUGcaCC-UGCUa---CCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 141628 0.69 0.794631
Target:  5'- gGCGGugGcggcucggcgacggaGGGCGGUGGCgGUgcCGCGg -3'
miRNA:   3'- aCGCCugCa--------------CCUGCUACCGgUA--GCGC- -5'
15850 5' -58 NC_004065.1 + 33974 0.66 0.921577
Target:  5'- -aCGGGCcccGACGAUGGCUcgCGCu -3'
miRNA:   3'- acGCCUGcacCUGCUACCGGuaGCGc -5'
15850 5' -58 NC_004065.1 + 102098 0.72 0.634116
Target:  5'- cGCGGGCG---GCGAUGGCCGgaccgaggugCGCGg -3'
miRNA:   3'- aCGCCUGCaccUGCUACCGGUa---------GCGC- -5'
15850 5' -58 NC_004065.1 + 169151 0.72 0.634116
Target:  5'- gGCGGgaauACGaGGGCcuGAUGGCCuUCGCGg -3'
miRNA:   3'- aCGCC----UGCaCCUG--CUACCGGuAGCGC- -5'
15850 5' -58 NC_004065.1 + 197995 0.71 0.70106
Target:  5'- gGCaGGACG-GGacacugcGCGAUGGCCucggaggcgGUCGCGg -3'
miRNA:   3'- aCG-CCUGCaCC-------UGCUACCGG---------UAGCGC- -5'
15850 5' -58 NC_004065.1 + 100578 0.71 0.702018
Target:  5'- aGCGcGACGccGGAgaccuuagguaUGAUGGCgGUCGCGg -3'
miRNA:   3'- aCGC-CUGCa-CCU-----------GCUACCGgUAGCGC- -5'
15850 5' -58 NC_004065.1 + 141395 0.7 0.749061
Target:  5'- gGCucGACGUGGAuccCGAgcuggcGGCCAUCGCc -3'
miRNA:   3'- aCGc-CUGCACCU---GCUa-----CCGGUAGCGc -5'
15850 5' -58 NC_004065.1 + 171958 0.69 0.776229
Target:  5'- gGCGGGCgGUGGcggcggcggcgGCGGaggGGUCGUCGUGa -3'
miRNA:   3'- aCGCCUG-CACC-----------UGCUa--CCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 146581 0.7 0.758221
Target:  5'- cGCGGGuaaGgGGAUcggGGUGGCCAUCGgGg -3'
miRNA:   3'- aCGCCUg--CaCCUG---CUACCGGUAGCgC- -5'
15850 5' -58 NC_004065.1 + 192388 0.7 0.739807
Target:  5'- cUGCGGcCGUguccaGGACGGUGGCC--UGUGa -3'
miRNA:   3'- -ACGCCuGCA-----CCUGCUACCGGuaGCGC- -5'
15850 5' -58 NC_004065.1 + 33804 0.8 0.262539
Target:  5'- aUGCGGACGUgGGACGAcgcggacaagcUGGCCAUCa-- -3'
miRNA:   3'- -ACGCCUGCA-CCUGCU-----------ACCGGUAGcgc -5'
15850 5' -58 NC_004065.1 + 168548 0.69 0.767279
Target:  5'- gGCauGGugGUGGACGccAUGGCgCAgCGCa -3'
miRNA:   3'- aCG--CCugCACCUGC--UACCG-GUaGCGc -5'
15850 5' -58 NC_004065.1 + 143900 0.74 0.500123
Target:  5'- cGCGGACG-GGACGGUGGUgcccaGCGa -3'
miRNA:   3'- aCGCCUGCaCCUGCUACCGguag-CGC- -5'
15850 5' -58 NC_004065.1 + 67935 0.71 0.702018
Target:  5'- cGCGGACGUGGuACGAgcacCCGuUCGCu -3'
miRNA:   3'- aCGCCUGCACC-UGCUacc-GGU-AGCGc -5'
15850 5' -58 NC_004065.1 + 179674 0.69 0.776229
Target:  5'- aGCGGGgG-GGcucgggaucgcgGCGGUGGCCA-CGCGu -3'
miRNA:   3'- aCGCCUgCaCC------------UGCUACCGGUaGCGC- -5'
15850 5' -58 NC_004065.1 + 165430 0.69 0.78506
Target:  5'- gGCGGGCGUcGcCGcGUGGUUAUCGUGg -3'
miRNA:   3'- aCGCCUGCAcCuGC-UACCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 637 0.73 0.585418
Target:  5'- gGCGGAUGUGGGUGAgugcguccGGCCG-CGCGu -3'
miRNA:   3'- aCGCCUGCACCUGCUa-------CCGGUaGCGC- -5'
15850 5' -58 NC_004065.1 + 105228 0.72 0.643879
Target:  5'- gGCGGACGUcGGACGAggagaUGGUgG-CGCa -3'
miRNA:   3'- aCGCCUGCA-CCUGCU-----ACCGgUaGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.