miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15850 5' -58 NC_004065.1 + 67935 0.71 0.702018
Target:  5'- cGCGGACGUGGuACGAgcacCCGuUCGCu -3'
miRNA:   3'- aCGCCUGCACC-UGCUacc-GGU-AGCGc -5'
15850 5' -58 NC_004065.1 + 54543 0.66 0.91617
Target:  5'- cUGaCGGucCGUGGACGAUgGGgCGugcUCGCa -3'
miRNA:   3'- -AC-GCCu-GCACCUGCUA-CCgGU---AGCGc -5'
15850 5' -58 NC_004065.1 + 192150 0.66 0.921577
Target:  5'- gUGCGGAacauCGUGc-CGAUcaccGCCGUCGCGa -3'
miRNA:   3'- -ACGCCU----GCACcuGCUAc---CGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 7369 0.66 0.909972
Target:  5'- cUGuCGGACGUGGggcgcugACGcgGGCCcuccucgguacUCGCGc -3'
miRNA:   3'- -AC-GCCUGCACC-------UGCuaCCGGu----------AGCGC- -5'
15850 5' -58 NC_004065.1 + 212841 0.67 0.891115
Target:  5'- cUGgGGACGaGGACGAUccuuugggggauGCCGUCGUa -3'
miRNA:   3'- -ACgCCUGCaCCUGCUAc-----------CGGUAGCGc -5'
15850 5' -58 NC_004065.1 + 209413 0.68 0.850594
Target:  5'- cGCGGAacuCGUccuggaagaGGAacaGAUGGCCGUCGa- -3'
miRNA:   3'- aCGCCU---GCA---------CCUg--CUACCGGUAGCgc -5'
15850 5' -58 NC_004065.1 + 200867 0.73 0.585418
Target:  5'- cGgGGGCGcGGGCGGUGGCgaAUCGuCGg -3'
miRNA:   3'- aCgCCUGCaCCUGCUACCGg-UAGC-GC- -5'
15850 5' -58 NC_004065.1 + 107803 0.66 0.926767
Target:  5'- -uUGGcCGUGGGCGAgcgGGCCAccaGCc -3'
miRNA:   3'- acGCCuGCACCUGCUa--CCGGUag-CGc -5'
15850 5' -58 NC_004065.1 + 135560 0.66 0.926767
Target:  5'- gGCGGACGacgGGGaGgcGGCCGUCa-- -3'
miRNA:   3'- aCGCCUGCa--CCUgCuaCCGGUAGcgc -5'
15850 5' -58 NC_004065.1 + 24372 0.66 0.926767
Target:  5'- gGC-GACGUGGGCaaaGGCC-UCGCu -3'
miRNA:   3'- aCGcCUGCACCUGcuaCCGGuAGCGc -5'
15850 5' -58 NC_004065.1 + 124818 0.66 0.925233
Target:  5'- cGcCGGGCGUccACGAacagcggcuccgccUGGuCCAUCGCGa -3'
miRNA:   3'- aC-GCCUGCAccUGCU--------------ACC-GGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 19468 0.67 0.879248
Target:  5'- gUGgGGACG-GGAguCGGUGGagcgcccaUCGUCGCGa -3'
miRNA:   3'- -ACgCCUGCaCCU--GCUACC--------GGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 47286 0.67 0.879248
Target:  5'- cGCcGACGUGu-CGGUGGCCccggcGUCGCc -3'
miRNA:   3'- aCGcCUGCACcuGCUACCGG-----UAGCGc -5'
15850 5' -58 NC_004065.1 + 139704 0.67 0.879248
Target:  5'- cGCGGACGcgcuugccggaugagGGACG-UGGCCGaggaacuUCGUa -3'
miRNA:   3'- aCGCCUGCa--------------CCUGCuACCGGU-------AGCGc -5'
15850 5' -58 NC_004065.1 + 226125 0.67 0.865303
Target:  5'- gGCGGgggucgccGCGUGGAgGcUGGC-AUCGCa -3'
miRNA:   3'- aCGCC--------UGCACCUgCuACCGgUAGCGc -5'
15850 5' -58 NC_004065.1 + 188257 0.67 0.858041
Target:  5'- gGCGGACagGUcGGCGGucaucuUGGCCAcccUCGCGu -3'
miRNA:   3'- aCGCCUG--CAcCUGCU------ACCGGU---AGCGC- -5'
15850 5' -58 NC_004065.1 + 73965 0.67 0.885923
Target:  5'- gGCGucGGCGaGGuCGA-GGUCGUCGCGg -3'
miRNA:   3'- aCGC--CUGCaCCuGCUaCCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 68141 0.69 0.776229
Target:  5'- cUGuCGGACGagcUGGACGc-GGUgAUCGCGg -3'
miRNA:   3'- -AC-GCCUGC---ACCUGCuaCCGgUAGCGC- -5'
15850 5' -58 NC_004065.1 + 194064 0.69 0.76728
Target:  5'- cGCGGACGUaacGACGAUaGaaGUCGCGg -3'
miRNA:   3'- aCGCCUGCAc--CUGCUAcCggUAGCGC- -5'
15850 5' -58 NC_004065.1 + 48094 0.7 0.758221
Target:  5'- cGCGGACcUGuGGCGgcGGCgGUgGCGg -3'
miRNA:   3'- aCGCCUGcAC-CUGCuaCCGgUAgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.