miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15852 3' -56.5 NC_004065.1 + 201405 0.66 0.953639
Target:  5'- -aGUUgGCGUguguugGGAUGUGGGuCGugGGGa -3'
miRNA:   3'- ugCGGgUGUA------UCUACACCC-GCugCCU- -5'
15852 3' -56.5 NC_004065.1 + 24288 0.66 0.953639
Target:  5'- cGCGgcCCCGCGacAGAUGaugGGGCGACGc- -3'
miRNA:   3'- -UGC--GGGUGUa-UCUACa--CCCGCUGCcu -5'
15852 3' -56.5 NC_004065.1 + 165232 0.66 0.953639
Target:  5'- cACGCUCAC--GGAUG-GGGUcagGAUGGGg -3'
miRNA:   3'- -UGCGGGUGuaUCUACaCCCG---CUGCCU- -5'
15852 3' -56.5 NC_004065.1 + 30888 0.66 0.953254
Target:  5'- aGCGCCCGCA-------GGGCGuCGGGg -3'
miRNA:   3'- -UGCGGGUGUaucuacaCCCGCuGCCU- -5'
15852 3' -56.5 NC_004065.1 + 106561 0.66 0.949688
Target:  5'- -gGCUCGCAgcgcGGGUcGcUGGGCGACGuGAu -3'
miRNA:   3'- ugCGGGUGUa---UCUA-C-ACCCGCUGC-CU- -5'
15852 3' -56.5 NC_004065.1 + 123452 0.66 0.945518
Target:  5'- -gGCCgaACAgguGAUGUcGGUGACGGAa -3'
miRNA:   3'- ugCGGg-UGUau-CUACAcCCGCUGCCU- -5'
15852 3' -56.5 NC_004065.1 + 167585 0.66 0.945518
Target:  5'- uUGUCgACGUcuGAUGUGGGUgcuGGCGGGg -3'
miRNA:   3'- uGCGGgUGUAu-CUACACCCG---CUGCCU- -5'
15852 3' -56.5 NC_004065.1 + 128368 0.66 0.945518
Target:  5'- uGCGCCCAUcgGGGcuucGGCGGCGaGAg -3'
miRNA:   3'- -UGCGGGUGuaUCUacacCCGCUGC-CU- -5'
15852 3' -56.5 NC_004065.1 + 197811 0.66 0.941129
Target:  5'- aGCGCCCGCGgcgccacguugGGGUcGUccaggucccagGGGCGGCaGGAg -3'
miRNA:   3'- -UGCGGGUGUa----------UCUA-CA-----------CCCGCUG-CCU- -5'
15852 3' -56.5 NC_004065.1 + 223132 0.66 0.936516
Target:  5'- cCG-CCGCGUAGAUGaGGGCGAgcauccCGGc -3'
miRNA:   3'- uGCgGGUGUAUCUACaCCCGCU------GCCu -5'
15852 3' -56.5 NC_004065.1 + 33796 0.66 0.936516
Target:  5'- -gGCCCgACAUgcGGAcGUGGGaCGACGcGGa -3'
miRNA:   3'- ugCGGG-UGUA--UCUaCACCC-GCUGC-CU- -5'
15852 3' -56.5 NC_004065.1 + 51179 0.66 0.93168
Target:  5'- cAUGUCCACGUuuuGGUGgaGGGUGGCGcGGu -3'
miRNA:   3'- -UGCGGGUGUAu--CUACa-CCCGCUGC-CU- -5'
15852 3' -56.5 NC_004065.1 + 151380 0.67 0.915822
Target:  5'- uGCGCUgGCGgccGAUcucuUGGGUGGCGGAg -3'
miRNA:   3'- -UGCGGgUGUau-CUAc---ACCCGCUGCCU- -5'
15852 3' -56.5 NC_004065.1 + 103694 0.67 0.910087
Target:  5'- -aGaCCUACAcg---GUGGGCGGCGGGg -3'
miRNA:   3'- ugC-GGGUGUaucuaCACCCGCUGCCU- -5'
15852 3' -56.5 NC_004065.1 + 112 0.67 0.909501
Target:  5'- cCGCCCaugcaagugaaugGCGUGGA-GUGGGUGuuGGGc -3'
miRNA:   3'- uGCGGG-------------UGUAUCUaCACCCGCugCCU- -5'
15852 3' -56.5 NC_004065.1 + 200806 0.67 0.897952
Target:  5'- gGCGUCUcggcGCGgGGAUcGgacgGGGCGACGGGg -3'
miRNA:   3'- -UGCGGG----UGUaUCUA-Ca---CCCGCUGCCU- -5'
15852 3' -56.5 NC_004065.1 + 129981 0.67 0.897952
Target:  5'- gUGUCCGCAgaacgccGcgG-GGGCGGCGGAc -3'
miRNA:   3'- uGCGGGUGUau-----CuaCaCCCGCUGCCU- -5'
15852 3' -56.5 NC_004065.1 + 32943 0.68 0.871102
Target:  5'- gGCuCCCGCGcGGAUGcGGGCGucgacgucgcgGCGGAg -3'
miRNA:   3'- -UGcGGGUGUaUCUACaCCCGC-----------UGCCU- -5'
15852 3' -56.5 NC_004065.1 + 72231 0.68 0.863874
Target:  5'- cCGCCCGC--AGAUGUGGaUGuCGGAc -3'
miRNA:   3'- uGCGGGUGuaUCUACACCcGCuGCCU- -5'
15852 3' -56.5 NC_004065.1 + 212340 0.69 0.85645
Target:  5'- gACGgCCACGgcGAUG-GcGCGACGGAc -3'
miRNA:   3'- -UGCgGGUGUauCUACaCcCGCUGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.