Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15852 | 3' | -56.5 | NC_004065.1 | + | 165232 | 0.66 | 0.953639 |
Target: 5'- cACGCUCAC--GGAUG-GGGUcagGAUGGGg -3' miRNA: 3'- -UGCGGGUGuaUCUACaCCCG---CUGCCU- -5' |
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15852 | 3' | -56.5 | NC_004065.1 | + | 106561 | 0.66 | 0.949688 |
Target: 5'- -gGCUCGCAgcgcGGGUcGcUGGGCGACGuGAu -3' miRNA: 3'- ugCGGGUGUa---UCUA-C-ACCCGCUGC-CU- -5' |
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15852 | 3' | -56.5 | NC_004065.1 | + | 24288 | 0.66 | 0.953639 |
Target: 5'- cGCGgcCCCGCGacAGAUGaugGGGCGACGc- -3' miRNA: 3'- -UGC--GGGUGUa-UCUACa--CCCGCUGCcu -5' |
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15852 | 3' | -56.5 | NC_004065.1 | + | 30888 | 0.66 | 0.953254 |
Target: 5'- aGCGCCCGCA-------GGGCGuCGGGg -3' miRNA: 3'- -UGCGGGUGUaucuacaCCCGCuGCCU- -5' |
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15852 | 3' | -56.5 | NC_004065.1 | + | 167585 | 0.66 | 0.945518 |
Target: 5'- uUGUCgACGUcuGAUGUGGGUgcuGGCGGGg -3' miRNA: 3'- uGCGGgUGUAu-CUACACCCG---CUGCCU- -5' |
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15852 | 3' | -56.5 | NC_004065.1 | + | 128368 | 0.66 | 0.945518 |
Target: 5'- uGCGCCCAUcgGGGcuucGGCGGCGaGAg -3' miRNA: 3'- -UGCGGGUGuaUCUacacCCGCUGC-CU- -5' |
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15852 | 3' | -56.5 | NC_004065.1 | + | 197811 | 0.66 | 0.941129 |
Target: 5'- aGCGCCCGCGgcgccacguugGGGUcGUccaggucccagGGGCGGCaGGAg -3' miRNA: 3'- -UGCGGGUGUa----------UCUA-CA-----------CCCGCUG-CCU- -5' |
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15852 | 3' | -56.5 | NC_004065.1 | + | 223132 | 0.66 | 0.936516 |
Target: 5'- cCG-CCGCGUAGAUGaGGGCGAgcauccCGGc -3' miRNA: 3'- uGCgGGUGUAUCUACaCCCGCU------GCCu -5' |
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15852 | 3' | -56.5 | NC_004065.1 | + | 51179 | 0.66 | 0.93168 |
Target: 5'- cAUGUCCACGUuuuGGUGgaGGGUGGCGcGGu -3' miRNA: 3'- -UGCGGGUGUAu--CUACa-CCCGCUGC-CU- -5' |
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15852 | 3' | -56.5 | NC_004065.1 | + | 201405 | 0.66 | 0.953639 |
Target: 5'- -aGUUgGCGUguguugGGAUGUGGGuCGugGGGa -3' miRNA: 3'- ugCGGgUGUA------UCUACACCC-GCugCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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