miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15852 3' -56.5 NC_004065.1 + 83284 1.09 0.004228
Target:  5'- gACGCCCACAUAGAUGUGGGCGACGGAg -3'
miRNA:   3'- -UGCGGGUGUAUCUACACCCGCUGCCU- -5'
15852 3' -56.5 NC_004065.1 + 108318 0.81 0.266321
Target:  5'- gACGCCCGCA-AGcGUGcgGGGCGACGGGg -3'
miRNA:   3'- -UGCGGGUGUaUC-UACa-CCCGCUGCCU- -5'
15852 3' -56.5 NC_004065.1 + 146743 0.8 0.298427
Target:  5'- uCGCCCACAUcuAUGUGGGCGuCGGc -3'
miRNA:   3'- uGCGGGUGUAucUACACCCGCuGCCu -5'
15852 3' -56.5 NC_004065.1 + 19761 0.8 0.298427
Target:  5'- -gGCgUGCGgGGGUGUGGGCGACGGAg -3'
miRNA:   3'- ugCGgGUGUaUCUACACCCGCUGCCU- -5'
15852 3' -56.5 NC_004065.1 + 164343 0.75 0.501409
Target:  5'- cACGCCCGCGc-GAUGUccucGGGCGuCGGAu -3'
miRNA:   3'- -UGCGGGUGUauCUACA----CCCGCuGCCU- -5'
15852 3' -56.5 NC_004065.1 + 19488 0.74 0.568597
Target:  5'- aGCGCCCAuCGUcgcGAUG-GGGaCGGCGGAa -3'
miRNA:   3'- -UGCGGGU-GUAu--CUACaCCC-GCUGCCU- -5'
15852 3' -56.5 NC_004065.1 + 309 0.71 0.726049
Target:  5'- cGCGCCCGCG-AGAcGUGuacGGCGugGGu -3'
miRNA:   3'- -UGCGGGUGUaUCUaCAC---CCGCugCCu -5'
15852 3' -56.5 NC_004065.1 + 123600 0.71 0.745034
Target:  5'- aGCGCCCGCGcGGGuUGUucGGGUaGCGGAa -3'
miRNA:   3'- -UGCGGGUGUaUCU-ACA--CCCGcUGCCU- -5'
15852 3' -56.5 NC_004065.1 + 107791 0.7 0.781821
Target:  5'- cCGCCCGgAUacuuGGccGUGGGCGAgCGGGc -3'
miRNA:   3'- uGCGGGUgUA----UCuaCACCCGCU-GCCU- -5'
15852 3' -56.5 NC_004065.1 + 200540 0.69 0.833054
Target:  5'- gGCGUCCAUGgcGA---GGGCGACGGGc -3'
miRNA:   3'- -UGCGGGUGUauCUacaCCCGCUGCCU- -5'
15852 3' -56.5 NC_004065.1 + 212340 0.69 0.85645
Target:  5'- gACGgCCACGgcGAUG-GcGCGACGGAc -3'
miRNA:   3'- -UGCgGGUGUauCUACaCcCGCUGCCU- -5'
15852 3' -56.5 NC_004065.1 + 72231 0.68 0.863874
Target:  5'- cCGCCCGC--AGAUGUGGaUGuCGGAc -3'
miRNA:   3'- uGCGGGUGuaUCUACACCcGCuGCCU- -5'
15852 3' -56.5 NC_004065.1 + 32943 0.68 0.871102
Target:  5'- gGCuCCCGCGcGGAUGcGGGCGucgacgucgcgGCGGAg -3'
miRNA:   3'- -UGcGGGUGUaUCUACaCCCGC-----------UGCCU- -5'
15852 3' -56.5 NC_004065.1 + 129981 0.67 0.897952
Target:  5'- gUGUCCGCAgaacgccGcgG-GGGCGGCGGAc -3'
miRNA:   3'- uGCGGGUGUau-----CuaCaCCCGCUGCCU- -5'
15852 3' -56.5 NC_004065.1 + 200806 0.67 0.897952
Target:  5'- gGCGUCUcggcGCGgGGAUcGgacgGGGCGACGGGg -3'
miRNA:   3'- -UGCGGG----UGUaUCUA-Ca---CCCGCUGCCU- -5'
15852 3' -56.5 NC_004065.1 + 112 0.67 0.909501
Target:  5'- cCGCCCaugcaagugaaugGCGUGGA-GUGGGUGuuGGGc -3'
miRNA:   3'- uGCGGG-------------UGUAUCUaCACCCGCugCCU- -5'
15852 3' -56.5 NC_004065.1 + 103694 0.67 0.910087
Target:  5'- -aGaCCUACAcg---GUGGGCGGCGGGg -3'
miRNA:   3'- ugC-GGGUGUaucuaCACCCGCUGCCU- -5'
15852 3' -56.5 NC_004065.1 + 151380 0.67 0.915822
Target:  5'- uGCGCUgGCGgccGAUcucuUGGGUGGCGGAg -3'
miRNA:   3'- -UGCGGgUGUau-CUAc---ACCCGCUGCCU- -5'
15852 3' -56.5 NC_004065.1 + 51179 0.66 0.93168
Target:  5'- cAUGUCCACGUuuuGGUGgaGGGUGGCGcGGu -3'
miRNA:   3'- -UGCGGGUGUAu--CUACa-CCCGCUGC-CU- -5'
15852 3' -56.5 NC_004065.1 + 223132 0.66 0.936516
Target:  5'- cCG-CCGCGUAGAUGaGGGCGAgcauccCGGc -3'
miRNA:   3'- uGCgGGUGUAUCUACaCCCGCU------GCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.