Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15852 | 3' | -56.5 | NC_004065.1 | + | 200540 | 0.69 | 0.833054 |
Target: 5'- gGCGUCCAUGgcGA---GGGCGACGGGc -3' miRNA: 3'- -UGCGGGUGUauCUacaCCCGCUGCCU- -5' |
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15852 | 3' | -56.5 | NC_004065.1 | + | 107791 | 0.7 | 0.781821 |
Target: 5'- cCGCCCGgAUacuuGGccGUGGGCGAgCGGGc -3' miRNA: 3'- uGCGGGUgUA----UCuaCACCCGCU-GCCU- -5' |
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15852 | 3' | -56.5 | NC_004065.1 | + | 123600 | 0.71 | 0.745034 |
Target: 5'- aGCGCCCGCGcGGGuUGUucGGGUaGCGGAa -3' miRNA: 3'- -UGCGGGUGUaUCU-ACA--CCCGcUGCCU- -5' |
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15852 | 3' | -56.5 | NC_004065.1 | + | 309 | 0.71 | 0.726049 |
Target: 5'- cGCGCCCGCG-AGAcGUGuacGGCGugGGu -3' miRNA: 3'- -UGCGGGUGUaUCUaCAC---CCGCugCCu -5' |
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15852 | 3' | -56.5 | NC_004065.1 | + | 19488 | 0.74 | 0.568597 |
Target: 5'- aGCGCCCAuCGUcgcGAUG-GGGaCGGCGGAa -3' miRNA: 3'- -UGCGGGU-GUAu--CUACaCCC-GCUGCCU- -5' |
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15852 | 3' | -56.5 | NC_004065.1 | + | 164343 | 0.75 | 0.501409 |
Target: 5'- cACGCCCGCGc-GAUGUccucGGGCGuCGGAu -3' miRNA: 3'- -UGCGGGUGUauCUACA----CCCGCuGCCU- -5' |
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15852 | 3' | -56.5 | NC_004065.1 | + | 19761 | 0.8 | 0.298427 |
Target: 5'- -gGCgUGCGgGGGUGUGGGCGACGGAg -3' miRNA: 3'- ugCGgGUGUaUCUACACCCGCUGCCU- -5' |
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15852 | 3' | -56.5 | NC_004065.1 | + | 146743 | 0.8 | 0.298427 |
Target: 5'- uCGCCCACAUcuAUGUGGGCGuCGGc -3' miRNA: 3'- uGCGGGUGUAucUACACCCGCuGCCu -5' |
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15852 | 3' | -56.5 | NC_004065.1 | + | 108318 | 0.81 | 0.266321 |
Target: 5'- gACGCCCGCA-AGcGUGcgGGGCGACGGGg -3' miRNA: 3'- -UGCGGGUGUaUC-UACa-CCCGCUGCCU- -5' |
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15852 | 3' | -56.5 | NC_004065.1 | + | 83284 | 1.09 | 0.004228 |
Target: 5'- gACGCCCACAUAGAUGUGGGCGACGGAg -3' miRNA: 3'- -UGCGGGUGUAUCUACACCCGCUGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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