Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 15852 | 3' | -56.5 | NC_004065.1 | + | 72231 | 0.68 | 0.863874 |
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Target: 5'- cCGCCCGC--AGAUGUGGaUGuCGGAc -3' miRNA: 3'- uGCGGGUGuaUCUACACCcGCuGCCU- -5' |
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| 15852 | 3' | -56.5 | NC_004065.1 | + | 51179 | 0.66 | 0.93168 |
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Target: 5'- cAUGUCCACGUuuuGGUGgaGGGUGGCGcGGu -3' miRNA: 3'- -UGCGGGUGUAu--CUACa-CCCGCUGC-CU- -5' |
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| 15852 | 3' | -56.5 | NC_004065.1 | + | 33796 | 0.66 | 0.936516 |
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Target: 5'- -gGCCCgACAUgcGGAcGUGGGaCGACGcGGa -3' miRNA: 3'- ugCGGG-UGUA--UCUaCACCC-GCUGC-CU- -5' |
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| 15852 | 3' | -56.5 | NC_004065.1 | + | 32943 | 0.68 | 0.871102 |
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Target: 5'- gGCuCCCGCGcGGAUGcGGGCGucgacgucgcgGCGGAg -3' miRNA: 3'- -UGcGGGUGUaUCUACaCCCGC-----------UGCCU- -5' |
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| 15852 | 3' | -56.5 | NC_004065.1 | + | 30888 | 0.66 | 0.953254 |
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Target: 5'- aGCGCCCGCA-------GGGCGuCGGGg -3' miRNA: 3'- -UGCGGGUGUaucuacaCCCGCuGCCU- -5' |
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| 15852 | 3' | -56.5 | NC_004065.1 | + | 24288 | 0.66 | 0.953639 |
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Target: 5'- cGCGgcCCCGCGacAGAUGaugGGGCGACGc- -3' miRNA: 3'- -UGC--GGGUGUa-UCUACa--CCCGCUGCcu -5' |
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| 15852 | 3' | -56.5 | NC_004065.1 | + | 19761 | 0.8 | 0.298427 |
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Target: 5'- -gGCgUGCGgGGGUGUGGGCGACGGAg -3' miRNA: 3'- ugCGgGUGUaUCUACACCCGCUGCCU- -5' |
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| 15852 | 3' | -56.5 | NC_004065.1 | + | 19488 | 0.74 | 0.568597 |
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Target: 5'- aGCGCCCAuCGUcgcGAUG-GGGaCGGCGGAa -3' miRNA: 3'- -UGCGGGU-GUAu--CUACaCCC-GCUGCCU- -5' |
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| 15852 | 3' | -56.5 | NC_004065.1 | + | 309 | 0.71 | 0.726049 |
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Target: 5'- cGCGCCCGCG-AGAcGUGuacGGCGugGGu -3' miRNA: 3'- -UGCGGGUGUaUCUaCAC---CCGCugCCu -5' |
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| 15852 | 3' | -56.5 | NC_004065.1 | + | 112 | 0.67 | 0.909501 |
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Target: 5'- cCGCCCaugcaagugaaugGCGUGGA-GUGGGUGuuGGGc -3' miRNA: 3'- uGCGGG-------------UGUAUCUaCACCCGCugCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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