miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15852 5' -59.7 NC_004065.1 + 119323 0.66 0.882611
Target:  5'- gGcCGAGuCGCGGCGgcgGCUCAcGUCa -3'
miRNA:   3'- gCaGCUC-GCGCCGCag-CGGGUaCAGc -5'
15852 5' -59.7 NC_004065.1 + 169954 0.66 0.882611
Target:  5'- aCGaCGAGCGCGGCccgCGUCgCAUGa-- -3'
miRNA:   3'- -GCaGCUCGCGCCGca-GCGG-GUACagc -5'
15852 5' -59.7 NC_004065.1 + 108732 0.66 0.882611
Target:  5'- ---gGGGCGC-GCGUCGCCCucacgcggGUCu -3'
miRNA:   3'- gcagCUCGCGcCGCAGCGGGua------CAGc -5'
15852 5' -59.7 NC_004065.1 + 86063 0.66 0.878642
Target:  5'- uCGUUGAGCucGCGGaUGUCggcgaaccugaagaaGCCCAUGUa- -3'
miRNA:   3'- -GCAGCUCG--CGCC-GCAG---------------CGGGUACAgc -5'
15852 5' -59.7 NC_004065.1 + 35753 0.66 0.875957
Target:  5'- gGUUGcAG-GaCGGCGUgGCCC-UGUCGa -3'
miRNA:   3'- gCAGC-UCgC-GCCGCAgCGGGuACAGC- -5'
15852 5' -59.7 NC_004065.1 + 173907 0.66 0.869113
Target:  5'- aGgCGAGCGCcGcCGUCGUCCGggacgGUCa -3'
miRNA:   3'- gCaGCUCGCGcC-GCAGCGGGUa----CAGc -5'
15852 5' -59.7 NC_004065.1 + 76521 0.66 0.869113
Target:  5'- uCGUUGAGgacgGCGGCGuguUCGCaCC-UGUCGc -3'
miRNA:   3'- -GCAGCUCg---CGCCGC---AGCG-GGuACAGC- -5'
15852 5' -59.7 NC_004065.1 + 66209 0.66 0.869113
Target:  5'- aCGaaGAGCGUGGCGUCGCUg------ -3'
miRNA:   3'- -GCagCUCGCGCCGCAGCGGguacagc -5'
15852 5' -59.7 NC_004065.1 + 184864 0.66 0.869113
Target:  5'- aGUCGAGCggGCGGCGggaCGCCgGgaaCGa -3'
miRNA:   3'- gCAGCUCG--CGCCGCa--GCGGgUacaGC- -5'
15852 5' -59.7 NC_004065.1 + 126224 0.66 0.862082
Target:  5'- cCGUaCGAgGCG-GGCGUcuucaCGCCCGUG-CGg -3'
miRNA:   3'- -GCA-GCU-CGCgCCGCA-----GCGGGUACaGC- -5'
15852 5' -59.7 NC_004065.1 + 162282 0.66 0.862082
Target:  5'- cCGUCGGaCGCGGCGcCGCUCGg--Ca -3'
miRNA:   3'- -GCAGCUcGCGCCGCaGCGGGUacaGc -5'
15852 5' -59.7 NC_004065.1 + 98537 0.66 0.861368
Target:  5'- aCGUCGGGagacgccgcccguCGCGGCaUCGUCCucGUCGu -3'
miRNA:   3'- -GCAGCUC-------------GCGCCGcAGCGGGuaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 59889 0.67 0.847478
Target:  5'- uCGUCGGGgucaucaugaGCGGCGUCuGCUCGagaaagacguUGUCGc -3'
miRNA:   3'- -GCAGCUCg---------CGCCGCAG-CGGGU----------ACAGC- -5'
15852 5' -59.7 NC_004065.1 + 199260 0.67 0.842961
Target:  5'- cCGUCGAGCGCGGUcuucaucuacgacccGgCGCCCua--CGg -3'
miRNA:   3'- -GCAGCUCGCGCCG---------------CaGCGGGuacaGC- -5'
15852 5' -59.7 NC_004065.1 + 112979 0.67 0.839916
Target:  5'- aCGuUCGcugaaGGCGCGGUGcagCGUCUcgGUCGg -3'
miRNA:   3'- -GC-AGC-----UCGCGCCGCa--GCGGGuaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 207704 0.67 0.839916
Target:  5'- uCGUCGuGCGaCGGgGUCGUCaacGUCa -3'
miRNA:   3'- -GCAGCuCGC-GCCgCAGCGGguaCAGc -5'
15852 5' -59.7 NC_004065.1 + 99725 0.67 0.839916
Target:  5'- -aUCGAGCGCccguGGCuGUagaucCCCGUGUCGa -3'
miRNA:   3'- gcAGCUCGCG----CCG-CAgc---GGGUACAGC- -5'
15852 5' -59.7 NC_004065.1 + 132875 0.67 0.839916
Target:  5'- -aUCGGcuuGCGCGGCcagaggGUCGCCU-UGUCGu -3'
miRNA:   3'- gcAGCU---CGCGCCG------CAGCGGGuACAGC- -5'
15852 5' -59.7 NC_004065.1 + 76308 0.67 0.8243
Target:  5'- uCGUCGAGC-CGGaGgaucCGCCgCGUGUUGg -3'
miRNA:   3'- -GCAGCUCGcGCCgCa---GCGG-GUACAGC- -5'
15852 5' -59.7 NC_004065.1 + 30884 0.67 0.816259
Target:  5'- -uUCGAGCGCccgcagGGCGUCGgggucgcaCUCGUGUCc -3'
miRNA:   3'- gcAGCUCGCG------CCGCAGC--------GGGUACAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.