Results 1 - 20 of 64 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 35753 | 0.66 | 0.875957 |
Target: 5'- gGUUGcAG-GaCGGCGUgGCCC-UGUCGa -3' miRNA: 3'- gCAGC-UCgC-GCCGCAgCGGGuACAGC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 162282 | 0.66 | 0.862082 |
Target: 5'- cCGUCGGaCGCGGCGcCGCUCGg--Ca -3' miRNA: 3'- -GCAGCUcGCGCCGCaGCGGGUacaGc -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 66209 | 0.66 | 0.869113 |
Target: 5'- aCGaaGAGCGUGGCGUCGCUg------ -3' miRNA: 3'- -GCagCUCGCGCCGCAGCGGguacagc -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 184864 | 0.66 | 0.869113 |
Target: 5'- aGUCGAGCggGCGGCGggaCGCCgGgaaCGa -3' miRNA: 3'- gCAGCUCG--CGCCGCa--GCGGgUacaGC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 169954 | 0.66 | 0.882611 |
Target: 5'- aCGaCGAGCGCGGCccgCGUCgCAUGa-- -3' miRNA: 3'- -GCaGCUCGCGCCGca-GCGG-GUACagc -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 173907 | 0.66 | 0.869113 |
Target: 5'- aGgCGAGCGCcGcCGUCGUCCGggacgGUCa -3' miRNA: 3'- gCaGCUCGCGcC-GCAGCGGGUa----CAGc -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 108732 | 0.66 | 0.882611 |
Target: 5'- ---gGGGCGC-GCGUCGCCCucacgcggGUCu -3' miRNA: 3'- gcagCUCGCGcCGCAGCGGGua------CAGc -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 86063 | 0.66 | 0.878642 |
Target: 5'- uCGUUGAGCucGCGGaUGUCggcgaaccugaagaaGCCCAUGUa- -3' miRNA: 3'- -GCAGCUCG--CGCC-GCAG---------------CGGGUACAgc -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 76521 | 0.66 | 0.869113 |
Target: 5'- uCGUUGAGgacgGCGGCGuguUCGCaCC-UGUCGc -3' miRNA: 3'- -GCAGCUCg---CGCCGC---AGCG-GGuACAGC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 98537 | 0.66 | 0.861368 |
Target: 5'- aCGUCGGGagacgccgcccguCGCGGCaUCGUCCucGUCGu -3' miRNA: 3'- -GCAGCUC-------------GCGCCGcAGCGGGuaCAGC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 119323 | 0.66 | 0.882611 |
Target: 5'- gGcCGAGuCGCGGCGgcgGCUCAcGUCa -3' miRNA: 3'- gCaGCUC-GCGCCGCag-CGGGUaCAGc -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 126224 | 0.66 | 0.862082 |
Target: 5'- cCGUaCGAgGCG-GGCGUcuucaCGCCCGUG-CGg -3' miRNA: 3'- -GCA-GCU-CGCgCCGCA-----GCGGGUACaGC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 30884 | 0.67 | 0.816259 |
Target: 5'- -uUCGAGCGCccgcagGGCGUCGgggucgcaCUCGUGUCc -3' miRNA: 3'- gcAGCUCGCG------CCGCAGC--------GGGUACAGc -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 199260 | 0.67 | 0.842961 |
Target: 5'- cCGUCGAGCGCGGUcuucaucuacgacccGgCGCCCua--CGg -3' miRNA: 3'- -GCAGCUCGCGCCG---------------CaGCGGGuacaGC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 82310 | 0.67 | 0.815446 |
Target: 5'- --cCGuAGCGCGGCGUCcaGCUCAuccgagccgguggUGUCGc -3' miRNA: 3'- gcaGC-UCGCGCCGCAG--CGGGU-------------ACAGC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 76308 | 0.67 | 0.8243 |
Target: 5'- uCGUCGAGC-CGGaGgaucCGCCgCGUGUUGg -3' miRNA: 3'- -GCAGCUCGcGCCgCa---GCGG-GUACAGC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 112979 | 0.67 | 0.839916 |
Target: 5'- aCGuUCGcugaaGGCGCGGUGcagCGUCUcgGUCGg -3' miRNA: 3'- -GC-AGC-----UCGCGCCGCa--GCGGGuaCAGC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 207704 | 0.67 | 0.839916 |
Target: 5'- uCGUCGuGCGaCGGgGUCGUCaacGUCa -3' miRNA: 3'- -GCAGCuCGC-GCCgCAGCGGguaCAGc -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 99725 | 0.67 | 0.839916 |
Target: 5'- -aUCGAGCGCccguGGCuGUagaucCCCGUGUCGa -3' miRNA: 3'- gcAGCUCGCG----CCG-CAgc---GGGUACAGC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 132875 | 0.67 | 0.839916 |
Target: 5'- -aUCGGcuuGCGCGGCcagaggGUCGCCU-UGUCGu -3' miRNA: 3'- gcAGCU---CGCGCCG------CAGCGGGuACAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home