miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15852 5' -59.7 NC_004065.1 + 83318 1.08 0.003078
Target:  5'- uCGUCGAGCGCGGCGUCGCCCAUGUCGu -3'
miRNA:   3'- -GCAGCUCGCGCCGCAGCGGGUACAGC- -5'
15852 5' -59.7 NC_004065.1 + 164649 0.76 0.361264
Target:  5'- aGUCGGGuCGCGGCGcgcgUCGCCag-GUCGa -3'
miRNA:   3'- gCAGCUC-GCGCCGC----AGCGGguaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 109839 0.75 0.416091
Target:  5'- aGggCGAGCGCGGCGUCGCUCcccUCa -3'
miRNA:   3'- gCa-GCUCGCGCCGCAGCGGGuacAGc -5'
15852 5' -59.7 NC_004065.1 + 47294 0.73 0.484583
Target:  5'- uGUCGguGGCccCGGCGUCGCCCGUGagGc -3'
miRNA:   3'- gCAGC--UCGc-GCCGCAGCGGGUACagC- -5'
15852 5' -59.7 NC_004065.1 + 224543 0.73 0.520795
Target:  5'- gCGggCGAGaCGUGGaUGUCGCCCGUGUa- -3'
miRNA:   3'- -GCa-GCUC-GCGCC-GCAGCGGGUACAgc -5'
15852 5' -59.7 NC_004065.1 + 29710 0.72 0.558017
Target:  5'- gGUCGAGCgGCGGaCGcCGCCCAgGaCGa -3'
miRNA:   3'- gCAGCUCG-CGCC-GCaGCGGGUaCaGC- -5'
15852 5' -59.7 NC_004065.1 + 91127 0.72 0.567446
Target:  5'- uCGcUGAGCGCGGgGUCGuagaaCCCGUGcUCGa -3'
miRNA:   3'- -GCaGCUCGCGCCgCAGC-----GGGUAC-AGC- -5'
15852 5' -59.7 NC_004065.1 + 128441 0.71 0.58642
Target:  5'- aGUCuGAGCGCGGCGgaggCGUCCGcgGgcgCGa -3'
miRNA:   3'- gCAG-CUCGCGCCGCa---GCGGGUa-Ca--GC- -5'
15852 5' -59.7 NC_004065.1 + 116718 0.71 0.58642
Target:  5'- gCGUCcGGCgcgcgaGCGGCGUCGCCC--GUCa -3'
miRNA:   3'- -GCAGcUCG------CGCCGCAGCGGGuaCAGc -5'
15852 5' -59.7 NC_004065.1 + 119507 0.71 0.595954
Target:  5'- aGUCGuGCGCGGCGa-GCCU--GUCGa -3'
miRNA:   3'- gCAGCuCGCGCCGCagCGGGuaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 91818 0.71 0.615084
Target:  5'- ---aGAGCGCGGUcgagacgucgGUCGCCCGUGg-- -3'
miRNA:   3'- gcagCUCGCGCCG----------CAGCGGGUACagc -5'
15852 5' -59.7 NC_004065.1 + 66641 0.71 0.624669
Target:  5'- uCGUCGgcuucGGCGCGGUGggCGCCCGg--CGa -3'
miRNA:   3'- -GCAGC-----UCGCGCCGCa-GCGGGUacaGC- -5'
15852 5' -59.7 NC_004065.1 + 121644 0.71 0.624669
Target:  5'- gCGUUGAGCGCGuCGUCGUCC---UCGa -3'
miRNA:   3'- -GCAGCUCGCGCcGCAGCGGGuacAGC- -5'
15852 5' -59.7 NC_004065.1 + 74818 0.7 0.643849
Target:  5'- --aCGAGCGUGGaGaCGCCCggGUCGg -3'
miRNA:   3'- gcaGCUCGCGCCgCaGCGGGuaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 125139 0.7 0.653429
Target:  5'- cCGUCGcccagccGCGUGGCGaucagcCGCaCCAUGUCGu -3'
miRNA:   3'- -GCAGCu------CGCGCCGCa-----GCG-GGUACAGC- -5'
15852 5' -59.7 NC_004065.1 + 81984 0.7 0.653429
Target:  5'- uCGUCGAcGUuuucgGCGGCGgggaaggCGCCCGUGcCGc -3'
miRNA:   3'- -GCAGCU-CG-----CGCCGCa------GCGGGUACaGC- -5'
15852 5' -59.7 NC_004065.1 + 127484 0.7 0.653429
Target:  5'- gGUCGGGCGCGGCGggagcgUUGUCCAgcUCc -3'
miRNA:   3'- gCAGCUCGCGCCGC------AGCGGGUacAGc -5'
15852 5' -59.7 NC_004065.1 + 35464 0.7 0.662995
Target:  5'- aGUCGAcGCGCuGCGcggUGCCCGUGaCGa -3'
miRNA:   3'- gCAGCU-CGCGcCGCa--GCGGGUACaGC- -5'
15852 5' -59.7 NC_004065.1 + 185165 0.7 0.671586
Target:  5'- -cUCGAGCGagaGGCGacgcugcUCcgGCCCGUGUCGc -3'
miRNA:   3'- gcAGCUCGCg--CCGC-------AG--CGGGUACAGC- -5'
15852 5' -59.7 NC_004065.1 + 121057 0.7 0.672539
Target:  5'- uCGUCgGAGCcUGGCGUCGugcCCCAgGUCGu -3'
miRNA:   3'- -GCAG-CUCGcGCCGCAGC---GGGUaCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.