miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15852 5' -59.7 NC_004065.1 + 103746 0.67 0.816259
Target:  5'- gCGUCGGuucGCGCGGCGggGCCUccggaccGUCGc -3'
miRNA:   3'- -GCAGCU---CGCGCCGCagCGGGua-----CAGC- -5'
15852 5' -59.7 NC_004065.1 + 82310 0.67 0.815446
Target:  5'- --cCGuAGCGCGGCGUCcaGCUCAuccgagccgguggUGUCGc -3'
miRNA:   3'- gcaGC-UCGCGCCGCAG--CGGGU-------------ACAGC- -5'
15852 5' -59.7 NC_004065.1 + 131320 0.67 0.80807
Target:  5'- gGUCGAGaaGCugGGCGUC-CCCAUGaCGg -3'
miRNA:   3'- gCAGCUCg-CG--CCGCAGcGGGUACaGC- -5'
15852 5' -59.7 NC_004065.1 + 94636 0.67 0.80807
Target:  5'- gGUCGGGCGCGGCcggCGCgUCAccGUCc -3'
miRNA:   3'- gCAGCUCGCGCCGca-GCG-GGUa-CAGc -5'
15852 5' -59.7 NC_004065.1 + 130598 0.68 0.799742
Target:  5'- uGUCGAG-GCGGCGUCugccgcucggGCCCcUGcugCGa -3'
miRNA:   3'- gCAGCUCgCGCCGCAG----------CGGGuACa--GC- -5'
15852 5' -59.7 NC_004065.1 + 117104 0.68 0.791281
Target:  5'- uCG-CGAGCGUGcCG-CGCCCugGUGUCGc -3'
miRNA:   3'- -GCaGCUCGCGCcGCaGCGGG--UACAGC- -5'
15852 5' -59.7 NC_004065.1 + 107520 0.68 0.791281
Target:  5'- aCGagGAggugcGCGCGGCGacCGCCCAgcugcggGUCGu -3'
miRNA:   3'- -GCagCU-----CGCGCCGCa-GCGGGUa------CAGC- -5'
15852 5' -59.7 NC_004065.1 + 184824 0.68 0.782694
Target:  5'- gCGguggCGgcAGCgGCGGCGUguUGCCCcUGUCGg -3'
miRNA:   3'- -GCa---GC--UCG-CGCCGCA--GCGGGuACAGC- -5'
15852 5' -59.7 NC_004065.1 + 65217 0.68 0.773988
Target:  5'- aCGgccaGAGUGcCGGCGguggCGCCCGUcUCGa -3'
miRNA:   3'- -GCag--CUCGC-GCCGCa---GCGGGUAcAGC- -5'
15852 5' -59.7 NC_004065.1 + 110846 0.68 0.773988
Target:  5'- ---gGGGCGCGG-GcCGCCCGcGUCGa -3'
miRNA:   3'- gcagCUCGCGCCgCaGCGGGUaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 109866 0.68 0.773111
Target:  5'- uGcCGGGCGgugccacCGGCGUCGCCgCGgccgcGUCGg -3'
miRNA:   3'- gCaGCUCGC-------GCCGCAGCGG-GUa----CAGC- -5'
15852 5' -59.7 NC_004065.1 + 205532 0.68 0.772233
Target:  5'- gCGcUCaGGGCcgGCGGCGgugccaucuacgCGCCCAUGUCc -3'
miRNA:   3'- -GC-AG-CUCG--CGCCGCa-----------GCGGGUACAGc -5'
15852 5' -59.7 NC_004065.1 + 166145 0.68 0.765171
Target:  5'- aCGUCG-GCGcCGGCGgcagcggCGCCgAcGUCGu -3'
miRNA:   3'- -GCAGCuCGC-GCCGCa------GCGGgUaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 77965 0.69 0.750851
Target:  5'- aCGUCGAGCcccgagacgcuggccGCGGCGagcCGCCCcgGg-- -3'
miRNA:   3'- -GCAGCUCG---------------CGCCGCa--GCGGGuaCagc -5'
15852 5' -59.7 NC_004065.1 + 199369 0.69 0.738127
Target:  5'- gCGUCGAaCGUcuuccucauGGCGUCGUCCAUcUCGu -3'
miRNA:   3'- -GCAGCUcGCG---------CCGCAGCGGGUAcAGC- -5'
15852 5' -59.7 NC_004065.1 + 118088 0.69 0.738127
Target:  5'- uCGUCcaccGCGaCGGCGgCGCCCAUGgCGu -3'
miRNA:   3'- -GCAGcu--CGC-GCCGCaGCGGGUACaGC- -5'
15852 5' -59.7 NC_004065.1 + 58609 0.69 0.72894
Target:  5'- aGUCGAgaucgacgcGCGCGGCGgagUCGCCgGUcUCGc -3'
miRNA:   3'- gCAGCU---------CGCGCCGC---AGCGGgUAcAGC- -5'
15852 5' -59.7 NC_004065.1 + 206330 0.69 0.72894
Target:  5'- uGUCGGGCG-GGUGUCugGCCUcgGUaCGg -3'
miRNA:   3'- gCAGCUCGCgCCGCAG--CGGGuaCA-GC- -5'
15852 5' -59.7 NC_004065.1 + 113575 0.69 0.728017
Target:  5'- uCGUCGAGaaggcCGCGGgcaaauccaaacuCGUCGCCCGcgGUCc -3'
miRNA:   3'- -GCAGCUC-----GCGCC-------------GCAGCGGGUa-CAGc -5'
15852 5' -59.7 NC_004065.1 + 24568 0.69 0.719679
Target:  5'- uCGUCGGgaucGCGCGGUc-CGCgCGUGUCGu -3'
miRNA:   3'- -GCAGCU----CGCGCCGcaGCGgGUACAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.