Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 47294 | 0.73 | 0.484583 |
Target: 5'- uGUCGguGGCccCGGCGUCGCCCGUGagGc -3' miRNA: 3'- gCAGC--UCGc-GCCGCAGCGGGUACagC- -5' |
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15852 | 5' | -59.7 | NC_004065.1 | + | 109839 | 0.75 | 0.416091 |
Target: 5'- aGggCGAGCGCGGCGUCGCUCcccUCa -3' miRNA: 3'- gCa-GCUCGCGCCGCAGCGGGuacAGc -5' |
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15852 | 5' | -59.7 | NC_004065.1 | + | 164649 | 0.76 | 0.361264 |
Target: 5'- aGUCGGGuCGCGGCGcgcgUCGCCag-GUCGa -3' miRNA: 3'- gCAGCUC-GCGCCGC----AGCGGguaCAGC- -5' |
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15852 | 5' | -59.7 | NC_004065.1 | + | 83318 | 1.08 | 0.003078 |
Target: 5'- uCGUCGAGCGCGGCGUCGCCCAUGUCGu -3' miRNA: 3'- -GCAGCUCGCGCCGCAGCGGGUACAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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