miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15852 5' -59.7 NC_004065.1 + 24568 0.69 0.719679
Target:  5'- uCGUCGGgaucGCGCGGUc-CGCgCGUGUCGu -3'
miRNA:   3'- -GCAGCU----CGCGCCGcaGCGgGUACAGC- -5'
15852 5' -59.7 NC_004065.1 + 29710 0.72 0.558017
Target:  5'- gGUCGAGCgGCGGaCGcCGCCCAgGaCGa -3'
miRNA:   3'- gCAGCUCG-CGCC-GCaGCGGGUaCaGC- -5'
15852 5' -59.7 NC_004065.1 + 30884 0.67 0.816259
Target:  5'- -uUCGAGCGCccgcagGGCGUCGgggucgcaCUCGUGUCc -3'
miRNA:   3'- gcAGCUCGCG------CCGCAGC--------GGGUACAGc -5'
15852 5' -59.7 NC_004065.1 + 35464 0.7 0.662995
Target:  5'- aGUCGAcGCGCuGCGcggUGCCCGUGaCGa -3'
miRNA:   3'- gCAGCU-CGCGcCGCa--GCGGGUACaGC- -5'
15852 5' -59.7 NC_004065.1 + 35753 0.66 0.875957
Target:  5'- gGUUGcAG-GaCGGCGUgGCCC-UGUCGa -3'
miRNA:   3'- gCAGC-UCgC-GCCGCAgCGGGuACAGC- -5'
15852 5' -59.7 NC_004065.1 + 47294 0.73 0.484583
Target:  5'- uGUCGguGGCccCGGCGUCGCCCGUGagGc -3'
miRNA:   3'- gCAGC--UCGc-GCCGCAGCGGGUACagC- -5'
15852 5' -59.7 NC_004065.1 + 58609 0.69 0.72894
Target:  5'- aGUCGAgaucgacgcGCGCGGCGgagUCGCCgGUcUCGc -3'
miRNA:   3'- gCAGCU---------CGCGCCGC---AGCGGgUAcAGC- -5'
15852 5' -59.7 NC_004065.1 + 59889 0.67 0.847478
Target:  5'- uCGUCGGGgucaucaugaGCGGCGUCuGCUCGagaaagacguUGUCGc -3'
miRNA:   3'- -GCAGCUCg---------CGCCGCAG-CGGGU----------ACAGC- -5'
15852 5' -59.7 NC_004065.1 + 65217 0.68 0.773988
Target:  5'- aCGgccaGAGUGcCGGCGguggCGCCCGUcUCGa -3'
miRNA:   3'- -GCag--CUCGC-GCCGCa---GCGGGUAcAGC- -5'
15852 5' -59.7 NC_004065.1 + 66209 0.66 0.869113
Target:  5'- aCGaaGAGCGUGGCGUCGCUg------ -3'
miRNA:   3'- -GCagCUCGCGCCGCAGCGGguacagc -5'
15852 5' -59.7 NC_004065.1 + 66641 0.71 0.624669
Target:  5'- uCGUCGgcuucGGCGCGGUGggCGCCCGg--CGa -3'
miRNA:   3'- -GCAGC-----UCGCGCCGCa-GCGGGUacaGC- -5'
15852 5' -59.7 NC_004065.1 + 74818 0.7 0.643849
Target:  5'- --aCGAGCGUGGaGaCGCCCggGUCGg -3'
miRNA:   3'- gcaGCUCGCGCCgCaGCGGGuaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 76308 0.67 0.8243
Target:  5'- uCGUCGAGC-CGGaGgaucCGCCgCGUGUUGg -3'
miRNA:   3'- -GCAGCUCGcGCCgCa---GCGG-GUACAGC- -5'
15852 5' -59.7 NC_004065.1 + 76521 0.66 0.869113
Target:  5'- uCGUUGAGgacgGCGGCGuguUCGCaCC-UGUCGc -3'
miRNA:   3'- -GCAGCUCg---CGCCGC---AGCG-GGuACAGC- -5'
15852 5' -59.7 NC_004065.1 + 77965 0.69 0.750851
Target:  5'- aCGUCGAGCcccgagacgcuggccGCGGCGagcCGCCCcgGg-- -3'
miRNA:   3'- -GCAGCUCG---------------CGCCGCa--GCGGGuaCagc -5'
15852 5' -59.7 NC_004065.1 + 81984 0.7 0.653429
Target:  5'- uCGUCGAcGUuuucgGCGGCGgggaaggCGCCCGUGcCGc -3'
miRNA:   3'- -GCAGCU-CG-----CGCCGCa------GCGGGUACaGC- -5'
15852 5' -59.7 NC_004065.1 + 82310 0.67 0.815446
Target:  5'- --cCGuAGCGCGGCGUCcaGCUCAuccgagccgguggUGUCGc -3'
miRNA:   3'- gcaGC-UCGCGCCGCAG--CGGGU-------------ACAGC- -5'
15852 5' -59.7 NC_004065.1 + 83318 1.08 0.003078
Target:  5'- uCGUCGAGCGCGGCGUCGCCCAUGUCGu -3'
miRNA:   3'- -GCAGCUCGCGCCGCAGCGGGUACAGC- -5'
15852 5' -59.7 NC_004065.1 + 86063 0.66 0.878642
Target:  5'- uCGUUGAGCucGCGGaUGUCggcgaaccugaagaaGCCCAUGUa- -3'
miRNA:   3'- -GCAGCUCG--CGCC-GCAG---------------CGGGUACAgc -5'
15852 5' -59.7 NC_004065.1 + 91127 0.72 0.567446
Target:  5'- uCGcUGAGCGCGGgGUCGuagaaCCCGUGcUCGa -3'
miRNA:   3'- -GCaGCUCGCGCCgCAGC-----GGGUAC-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.