miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15852 5' -59.7 NC_004065.1 + 91818 0.71 0.615084
Target:  5'- ---aGAGCGCGGUcgagacgucgGUCGCCCGUGg-- -3'
miRNA:   3'- gcagCUCGCGCCG----------CAGCGGGUACagc -5'
15852 5' -59.7 NC_004065.1 + 94636 0.67 0.80807
Target:  5'- gGUCGGGCGCGGCcggCGCgUCAccGUCc -3'
miRNA:   3'- gCAGCUCGCGCCGca-GCG-GGUa-CAGc -5'
15852 5' -59.7 NC_004065.1 + 98537 0.66 0.861368
Target:  5'- aCGUCGGGagacgccgcccguCGCGGCaUCGUCCucGUCGu -3'
miRNA:   3'- -GCAGCUC-------------GCGCCGcAGCGGGuaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 99725 0.67 0.839916
Target:  5'- -aUCGAGCGCccguGGCuGUagaucCCCGUGUCGa -3'
miRNA:   3'- gcAGCUCGCG----CCG-CAgc---GGGUACAGC- -5'
15852 5' -59.7 NC_004065.1 + 103746 0.67 0.816259
Target:  5'- gCGUCGGuucGCGCGGCGggGCCUccggaccGUCGc -3'
miRNA:   3'- -GCAGCU---CGCGCCGCagCGGGua-----CAGC- -5'
15852 5' -59.7 NC_004065.1 + 107520 0.68 0.791281
Target:  5'- aCGagGAggugcGCGCGGCGacCGCCCAgcugcggGUCGu -3'
miRNA:   3'- -GCagCU-----CGCGCCGCa-GCGGGUa------CAGC- -5'
15852 5' -59.7 NC_004065.1 + 108732 0.66 0.882611
Target:  5'- ---gGGGCGC-GCGUCGCCCucacgcggGUCu -3'
miRNA:   3'- gcagCUCGCGcCGCAGCGGGua------CAGc -5'
15852 5' -59.7 NC_004065.1 + 109839 0.75 0.416091
Target:  5'- aGggCGAGCGCGGCGUCGCUCcccUCa -3'
miRNA:   3'- gCa-GCUCGCGCCGCAGCGGGuacAGc -5'
15852 5' -59.7 NC_004065.1 + 109866 0.68 0.773111
Target:  5'- uGcCGGGCGgugccacCGGCGUCGCCgCGgccgcGUCGg -3'
miRNA:   3'- gCaGCUCGC-------GCCGCAGCGG-GUa----CAGC- -5'
15852 5' -59.7 NC_004065.1 + 110846 0.68 0.773988
Target:  5'- ---gGGGCGCGG-GcCGCCCGcGUCGa -3'
miRNA:   3'- gcagCUCGCGCCgCaGCGGGUaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 112979 0.67 0.839916
Target:  5'- aCGuUCGcugaaGGCGCGGUGcagCGUCUcgGUCGg -3'
miRNA:   3'- -GC-AGC-----UCGCGCCGCa--GCGGGuaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 113575 0.69 0.728017
Target:  5'- uCGUCGAGaaggcCGCGGgcaaauccaaacuCGUCGCCCGcgGUCc -3'
miRNA:   3'- -GCAGCUC-----GCGCC-------------GCAGCGGGUa-CAGc -5'
15852 5' -59.7 NC_004065.1 + 116718 0.71 0.58642
Target:  5'- gCGUCcGGCgcgcgaGCGGCGUCGCCC--GUCa -3'
miRNA:   3'- -GCAGcUCG------CGCCGCAGCGGGuaCAGc -5'
15852 5' -59.7 NC_004065.1 + 117104 0.68 0.791281
Target:  5'- uCG-CGAGCGUGcCG-CGCCCugGUGUCGc -3'
miRNA:   3'- -GCaGCUCGCGCcGCaGCGGG--UACAGC- -5'
15852 5' -59.7 NC_004065.1 + 118088 0.69 0.738127
Target:  5'- uCGUCcaccGCGaCGGCGgCGCCCAUGgCGu -3'
miRNA:   3'- -GCAGcu--CGC-GCCGCaGCGGGUACaGC- -5'
15852 5' -59.7 NC_004065.1 + 119315 0.69 0.700968
Target:  5'- gGUCGAGgGUGGCGgcucUCGCCC-UGg-- -3'
miRNA:   3'- gCAGCUCgCGCCGC----AGCGGGuACagc -5'
15852 5' -59.7 NC_004065.1 + 119323 0.66 0.882611
Target:  5'- gGcCGAGuCGCGGCGgcgGCUCAcGUCa -3'
miRNA:   3'- gCaGCUC-GCGCCGCag-CGGGUaCAGc -5'
15852 5' -59.7 NC_004065.1 + 119507 0.71 0.595954
Target:  5'- aGUCGuGCGCGGCGa-GCCU--GUCGa -3'
miRNA:   3'- gCAGCuCGCGCCGCagCGGGuaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 121057 0.7 0.672539
Target:  5'- uCGUCgGAGCcUGGCGUCGugcCCCAgGUCGu -3'
miRNA:   3'- -GCAG-CUCGcGCCGCAGC---GGGUaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 121644 0.71 0.624669
Target:  5'- gCGUUGAGCGCGuCGUCGUCC---UCGa -3'
miRNA:   3'- -GCAGCUCGCGCcGCAGCGGGuacAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.