Results 41 - 60 of 64 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 125139 | 0.7 | 0.653429 |
Target: 5'- cCGUCGcccagccGCGUGGCGaucagcCGCaCCAUGUCGu -3' miRNA: 3'- -GCAGCu------CGCGCCGCa-----GCG-GGUACAGC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 126224 | 0.66 | 0.862082 |
Target: 5'- cCGUaCGAgGCG-GGCGUcuucaCGCCCGUG-CGg -3' miRNA: 3'- -GCA-GCU-CGCgCCGCA-----GCGGGUACaGC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 127484 | 0.7 | 0.653429 |
Target: 5'- gGUCGGGCGCGGCGggagcgUUGUCCAgcUCc -3' miRNA: 3'- gCAGCUCGCGCCGC------AGCGGGUacAGc -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 128441 | 0.71 | 0.58642 |
Target: 5'- aGUCuGAGCGCGGCGgaggCGUCCGcgGgcgCGa -3' miRNA: 3'- gCAG-CUCGCGCCGCa---GCGGGUa-Ca--GC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 130598 | 0.68 | 0.799742 |
Target: 5'- uGUCGAG-GCGGCGUCugccgcucggGCCCcUGcugCGa -3' miRNA: 3'- gCAGCUCgCGCCGCAG----------CGGGuACa--GC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 131320 | 0.67 | 0.80807 |
Target: 5'- gGUCGAGaaGCugGGCGUC-CCCAUGaCGg -3' miRNA: 3'- gCAGCUCg-CG--CCGCAGcGGGUACaGC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 132875 | 0.67 | 0.839916 |
Target: 5'- -aUCGGcuuGCGCGGCcagaggGUCGCCU-UGUCGu -3' miRNA: 3'- gcAGCU---CGCGCCG------CAGCGGGuACAGC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 133436 | 0.7 | 0.691533 |
Target: 5'- cCGggGAGUGCaGCGUCGCCaCGcGUCGc -3' miRNA: 3'- -GCagCUCGCGcCGCAGCGG-GUaCAGC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 161644 | 0.69 | 0.700968 |
Target: 5'- --aCGAaCGCGGCGaucuUCGCCUcgGUCGu -3' miRNA: 3'- gcaGCUcGCGCCGC----AGCGGGuaCAGC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 162282 | 0.66 | 0.862082 |
Target: 5'- cCGUCGGaCGCGGCGcCGCUCGg--Ca -3' miRNA: 3'- -GCAGCUcGCGCCGCaGCGGGUacaGc -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 164649 | 0.76 | 0.361264 |
Target: 5'- aGUCGGGuCGCGGCGcgcgUCGCCag-GUCGa -3' miRNA: 3'- gCAGCUC-GCGCCGC----AGCGGguaCAGC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 165420 | 0.69 | 0.710353 |
Target: 5'- cCGUCucuaGGGCG-GGCGUCGCCgCGUGguuaUCGu -3' miRNA: 3'- -GCAG----CUCGCgCCGCAGCGG-GUAC----AGC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 166145 | 0.68 | 0.765171 |
Target: 5'- aCGUCG-GCGcCGGCGgcagcggCGCCgAcGUCGu -3' miRNA: 3'- -GCAGCuCGC-GCCGCa------GCGGgUaCAGC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 169954 | 0.66 | 0.882611 |
Target: 5'- aCGaCGAGCGCGGCccgCGUCgCAUGa-- -3' miRNA: 3'- -GCaGCUCGCGCCGca-GCGG-GUACagc -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 173907 | 0.66 | 0.869113 |
Target: 5'- aGgCGAGCGCcGcCGUCGUCCGggacgGUCa -3' miRNA: 3'- gCaGCUCGCGcC-GCAGCGGGUa----CAGc -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 184824 | 0.68 | 0.782694 |
Target: 5'- gCGguggCGgcAGCgGCGGCGUguUGCCCcUGUCGg -3' miRNA: 3'- -GCa---GC--UCG-CGCCGCA--GCGGGuACAGC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 184864 | 0.66 | 0.869113 |
Target: 5'- aGUCGAGCggGCGGCGggaCGCCgGgaaCGa -3' miRNA: 3'- gCAGCUCG--CGCCGCa--GCGGgUacaGC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 185165 | 0.7 | 0.671586 |
Target: 5'- -cUCGAGCGagaGGCGacgcugcUCcgGCCCGUGUCGc -3' miRNA: 3'- gcAGCUCGCg--CCGC-------AG--CGGGUACAGC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 199260 | 0.67 | 0.842961 |
Target: 5'- cCGUCGAGCGCGGUcuucaucuacgacccGgCGCCCua--CGg -3' miRNA: 3'- -GCAGCUCGCGCCG---------------CaGCGGGuacaGC- -5' |
|||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 199369 | 0.69 | 0.738127 |
Target: 5'- gCGUCGAaCGUcuuccucauGGCGUCGUCCAUcUCGu -3' miRNA: 3'- -GCAGCUcGCG---------CCGCAGCGGGUAcAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home