Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 205532 | 0.68 | 0.772233 |
Target: 5'- gCGcUCaGGGCcgGCGGCGgugccaucuacgCGCCCAUGUCc -3' miRNA: 3'- -GC-AG-CUCG--CGCCGCa-----------GCGGGUACAGc -5' |
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15852 | 5' | -59.7 | NC_004065.1 | + | 206330 | 0.69 | 0.72894 |
Target: 5'- uGUCGGGCG-GGUGUCugGCCUcgGUaCGg -3' miRNA: 3'- gCAGCUCGCgCCGCAG--CGGGuaCA-GC- -5' |
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15852 | 5' | -59.7 | NC_004065.1 | + | 207704 | 0.67 | 0.839916 |
Target: 5'- uCGUCGuGCGaCGGgGUCGUCaacGUCa -3' miRNA: 3'- -GCAGCuCGC-GCCgCAGCGGguaCAGc -5' |
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15852 | 5' | -59.7 | NC_004065.1 | + | 224543 | 0.73 | 0.520795 |
Target: 5'- gCGggCGAGaCGUGGaUGUCGCCCGUGUa- -3' miRNA: 3'- -GCa-GCUC-GCGCC-GCAGCGGGUACAgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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