miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15852 5' -59.7 NC_004065.1 + 224543 0.73 0.520795
Target:  5'- gCGggCGAGaCGUGGaUGUCGCCCGUGUa- -3'
miRNA:   3'- -GCa-GCUC-GCGCC-GCAGCGGGUACAgc -5'
15852 5' -59.7 NC_004065.1 + 207704 0.67 0.839916
Target:  5'- uCGUCGuGCGaCGGgGUCGUCaacGUCa -3'
miRNA:   3'- -GCAGCuCGC-GCCgCAGCGGguaCAGc -5'
15852 5' -59.7 NC_004065.1 + 206330 0.69 0.72894
Target:  5'- uGUCGGGCG-GGUGUCugGCCUcgGUaCGg -3'
miRNA:   3'- gCAGCUCGCgCCGCAG--CGGGuaCA-GC- -5'
15852 5' -59.7 NC_004065.1 + 205532 0.68 0.772233
Target:  5'- gCGcUCaGGGCcgGCGGCGgugccaucuacgCGCCCAUGUCc -3'
miRNA:   3'- -GC-AG-CUCG--CGCCGCa-----------GCGGGUACAGc -5'
15852 5' -59.7 NC_004065.1 + 199369 0.69 0.738127
Target:  5'- gCGUCGAaCGUcuuccucauGGCGUCGUCCAUcUCGu -3'
miRNA:   3'- -GCAGCUcGCG---------CCGCAGCGGGUAcAGC- -5'
15852 5' -59.7 NC_004065.1 + 199260 0.67 0.842961
Target:  5'- cCGUCGAGCGCGGUcuucaucuacgacccGgCGCCCua--CGg -3'
miRNA:   3'- -GCAGCUCGCGCCG---------------CaGCGGGuacaGC- -5'
15852 5' -59.7 NC_004065.1 + 185165 0.7 0.671586
Target:  5'- -cUCGAGCGagaGGCGacgcugcUCcgGCCCGUGUCGc -3'
miRNA:   3'- gcAGCUCGCg--CCGC-------AG--CGGGUACAGC- -5'
15852 5' -59.7 NC_004065.1 + 184864 0.66 0.869113
Target:  5'- aGUCGAGCggGCGGCGggaCGCCgGgaaCGa -3'
miRNA:   3'- gCAGCUCG--CGCCGCa--GCGGgUacaGC- -5'
15852 5' -59.7 NC_004065.1 + 184824 0.68 0.782694
Target:  5'- gCGguggCGgcAGCgGCGGCGUguUGCCCcUGUCGg -3'
miRNA:   3'- -GCa---GC--UCG-CGCCGCA--GCGGGuACAGC- -5'
15852 5' -59.7 NC_004065.1 + 173907 0.66 0.869113
Target:  5'- aGgCGAGCGCcGcCGUCGUCCGggacgGUCa -3'
miRNA:   3'- gCaGCUCGCGcC-GCAGCGGGUa----CAGc -5'
15852 5' -59.7 NC_004065.1 + 169954 0.66 0.882611
Target:  5'- aCGaCGAGCGCGGCccgCGUCgCAUGa-- -3'
miRNA:   3'- -GCaGCUCGCGCCGca-GCGG-GUACagc -5'
15852 5' -59.7 NC_004065.1 + 166145 0.68 0.765171
Target:  5'- aCGUCG-GCGcCGGCGgcagcggCGCCgAcGUCGu -3'
miRNA:   3'- -GCAGCuCGC-GCCGCa------GCGGgUaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 165420 0.69 0.710353
Target:  5'- cCGUCucuaGGGCG-GGCGUCGCCgCGUGguuaUCGu -3'
miRNA:   3'- -GCAG----CUCGCgCCGCAGCGG-GUAC----AGC- -5'
15852 5' -59.7 NC_004065.1 + 164649 0.76 0.361264
Target:  5'- aGUCGGGuCGCGGCGcgcgUCGCCag-GUCGa -3'
miRNA:   3'- gCAGCUC-GCGCCGC----AGCGGguaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 162282 0.66 0.862082
Target:  5'- cCGUCGGaCGCGGCGcCGCUCGg--Ca -3'
miRNA:   3'- -GCAGCUcGCGCCGCaGCGGGUacaGc -5'
15852 5' -59.7 NC_004065.1 + 161644 0.69 0.700968
Target:  5'- --aCGAaCGCGGCGaucuUCGCCUcgGUCGu -3'
miRNA:   3'- gcaGCUcGCGCCGC----AGCGGGuaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 133436 0.7 0.691533
Target:  5'- cCGggGAGUGCaGCGUCGCCaCGcGUCGc -3'
miRNA:   3'- -GCagCUCGCGcCGCAGCGG-GUaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 132875 0.67 0.839916
Target:  5'- -aUCGGcuuGCGCGGCcagaggGUCGCCU-UGUCGu -3'
miRNA:   3'- gcAGCU---CGCGCCG------CAGCGGGuACAGC- -5'
15852 5' -59.7 NC_004065.1 + 131320 0.67 0.80807
Target:  5'- gGUCGAGaaGCugGGCGUC-CCCAUGaCGg -3'
miRNA:   3'- gCAGCUCg-CG--CCGCAGcGGGUACaGC- -5'
15852 5' -59.7 NC_004065.1 + 130598 0.68 0.799742
Target:  5'- uGUCGAG-GCGGCGUCugccgcucggGCCCcUGcugCGa -3'
miRNA:   3'- gCAGCUCgCGCCGCAG----------CGGGuACa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.