miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15852 5' -59.7 NC_004065.1 + 131320 0.67 0.80807
Target:  5'- gGUCGAGaaGCugGGCGUC-CCCAUGaCGg -3'
miRNA:   3'- gCAGCUCg-CG--CCGCAGcGGGUACaGC- -5'
15852 5' -59.7 NC_004065.1 + 113575 0.69 0.728017
Target:  5'- uCGUCGAGaaggcCGCGGgcaaauccaaacuCGUCGCCCGcgGUCc -3'
miRNA:   3'- -GCAGCUC-----GCGCC-------------GCAGCGGGUa-CAGc -5'
15852 5' -59.7 NC_004065.1 + 58609 0.69 0.72894
Target:  5'- aGUCGAgaucgacgcGCGCGGCGgagUCGCCgGUcUCGc -3'
miRNA:   3'- gCAGCU---------CGCGCCGC---AGCGGgUAcAGC- -5'
15852 5' -59.7 NC_004065.1 + 118088 0.69 0.738127
Target:  5'- uCGUCcaccGCGaCGGCGgCGCCCAUGgCGu -3'
miRNA:   3'- -GCAGcu--CGC-GCCGCaGCGGGUACaGC- -5'
15852 5' -59.7 NC_004065.1 + 199369 0.69 0.738127
Target:  5'- gCGUCGAaCGUcuuccucauGGCGUCGUCCAUcUCGu -3'
miRNA:   3'- -GCAGCUcGCG---------CCGCAGCGGGUAcAGC- -5'
15852 5' -59.7 NC_004065.1 + 77965 0.69 0.750851
Target:  5'- aCGUCGAGCcccgagacgcuggccGCGGCGagcCGCCCcgGg-- -3'
miRNA:   3'- -GCAGCUCG---------------CGCCGCa--GCGGGuaCagc -5'
15852 5' -59.7 NC_004065.1 + 166145 0.68 0.765171
Target:  5'- aCGUCG-GCGcCGGCGgcagcggCGCCgAcGUCGu -3'
miRNA:   3'- -GCAGCuCGC-GCCGCa------GCGGgUaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 109866 0.68 0.773111
Target:  5'- uGcCGGGCGgugccacCGGCGUCGCCgCGgccgcGUCGg -3'
miRNA:   3'- gCaGCUCGC-------GCCGCAGCGG-GUa----CAGC- -5'
15852 5' -59.7 NC_004065.1 + 110846 0.68 0.773988
Target:  5'- ---gGGGCGCGG-GcCGCCCGcGUCGa -3'
miRNA:   3'- gcagCUCGCGCCgCaGCGGGUaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 24568 0.69 0.719679
Target:  5'- uCGUCGGgaucGCGCGGUc-CGCgCGUGUCGu -3'
miRNA:   3'- -GCAGCU----CGCGCCGcaGCGgGUACAGC- -5'
15852 5' -59.7 NC_004065.1 + 119315 0.69 0.700968
Target:  5'- gGUCGAGgGUGGCGgcucUCGCCC-UGg-- -3'
miRNA:   3'- gCAGCUCgCGCCGC----AGCGGGuACagc -5'
15852 5' -59.7 NC_004065.1 + 35464 0.7 0.662995
Target:  5'- aGUCGAcGCGCuGCGcggUGCCCGUGaCGa -3'
miRNA:   3'- gCAGCU-CGCGcCGCa--GCGGGUACaGC- -5'
15852 5' -59.7 NC_004065.1 + 47294 0.73 0.484583
Target:  5'- uGUCGguGGCccCGGCGUCGCCCGUGagGc -3'
miRNA:   3'- gCAGC--UCGc-GCCGCAGCGGGUACagC- -5'
15852 5' -59.7 NC_004065.1 + 224543 0.73 0.520795
Target:  5'- gCGggCGAGaCGUGGaUGUCGCCCGUGUa- -3'
miRNA:   3'- -GCa-GCUC-GCGCC-GCAGCGGGUACAgc -5'
15852 5' -59.7 NC_004065.1 + 29710 0.72 0.558017
Target:  5'- gGUCGAGCgGCGGaCGcCGCCCAgGaCGa -3'
miRNA:   3'- gCAGCUCG-CGCC-GCaGCGGGUaCaGC- -5'
15852 5' -59.7 NC_004065.1 + 91127 0.72 0.567446
Target:  5'- uCGcUGAGCGCGGgGUCGuagaaCCCGUGcUCGa -3'
miRNA:   3'- -GCaGCUCGCGCCgCAGC-----GGGUAC-AGC- -5'
15852 5' -59.7 NC_004065.1 + 128441 0.71 0.58642
Target:  5'- aGUCuGAGCGCGGCGgaggCGUCCGcgGgcgCGa -3'
miRNA:   3'- gCAG-CUCGCGCCGCa---GCGGGUa-Ca--GC- -5'
15852 5' -59.7 NC_004065.1 + 74818 0.7 0.643849
Target:  5'- --aCGAGCGUGGaGaCGCCCggGUCGg -3'
miRNA:   3'- gcaGCUCGCGCCgCaGCGGGuaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 81984 0.7 0.653429
Target:  5'- uCGUCGAcGUuuucgGCGGCGgggaaggCGCCCGUGcCGc -3'
miRNA:   3'- -GCAGCU-CG-----CGCCGCa------GCGGGUACaGC- -5'
15852 5' -59.7 NC_004065.1 + 125139 0.7 0.653429
Target:  5'- cCGUCGcccagccGCGUGGCGaucagcCGCaCCAUGUCGu -3'
miRNA:   3'- -GCAGCu------CGCGCCGCa-----GCG-GGUACAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.