Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15852 | 5' | -59.7 | NC_004065.1 | + | 133436 | 0.7 | 0.691533 |
Target: 5'- cCGggGAGUGCaGCGUCGCCaCGcGUCGc -3' miRNA: 3'- -GCagCUCGCGcCGCAGCGG-GUaCAGC- -5' |
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15852 | 5' | -59.7 | NC_004065.1 | + | 161644 | 0.69 | 0.700968 |
Target: 5'- --aCGAaCGCGGCGaucuUCGCCUcgGUCGu -3' miRNA: 3'- gcaGCUcGCGCCGC----AGCGGGuaCAGC- -5' |
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15852 | 5' | -59.7 | NC_004065.1 | + | 165420 | 0.69 | 0.710353 |
Target: 5'- cCGUCucuaGGGCG-GGCGUCGCCgCGUGguuaUCGu -3' miRNA: 3'- -GCAG----CUCGCgCCGCAGCGG-GUAC----AGC- -5' |
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15852 | 5' | -59.7 | NC_004065.1 | + | 83318 | 1.08 | 0.003078 |
Target: 5'- uCGUCGAGCGCGGCGUCGCCCAUGUCGu -3' miRNA: 3'- -GCAGCUCGCGCCGCAGCGGGUACAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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