miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15852 5' -59.7 NC_004065.1 + 83318 1.08 0.003078
Target:  5'- uCGUCGAGCGCGGCGUCGCCCAUGUCGu -3'
miRNA:   3'- -GCAGCUCGCGCCGCAGCGGGUACAGC- -5'
15852 5' -59.7 NC_004065.1 + 107520 0.68 0.791281
Target:  5'- aCGagGAggugcGCGCGGCGacCGCCCAgcugcggGUCGu -3'
miRNA:   3'- -GCagCU-----CGCGCCGCa-GCGGGUa------CAGC- -5'
15852 5' -59.7 NC_004065.1 + 130598 0.68 0.799742
Target:  5'- uGUCGAG-GCGGCGUCugccgcucggGCCCcUGcugCGa -3'
miRNA:   3'- gCAGCUCgCGCCGCAG----------CGGGuACa--GC- -5'
15852 5' -59.7 NC_004065.1 + 169954 0.66 0.882611
Target:  5'- aCGaCGAGCGCGGCccgCGUCgCAUGa-- -3'
miRNA:   3'- -GCaGCUCGCGCCGca-GCGG-GUACagc -5'
15852 5' -59.7 NC_004065.1 + 91818 0.71 0.615084
Target:  5'- ---aGAGCGCGGUcgagacgucgGUCGCCCGUGg-- -3'
miRNA:   3'- gcagCUCGCGCCG----------CAGCGGGUACagc -5'
15852 5' -59.7 NC_004065.1 + 66641 0.71 0.624669
Target:  5'- uCGUCGgcuucGGCGCGGUGggCGCCCGg--CGa -3'
miRNA:   3'- -GCAGC-----UCGCGCCGCa-GCGGGUacaGC- -5'
15852 5' -59.7 NC_004065.1 + 127484 0.7 0.653429
Target:  5'- gGUCGGGCGCGGCGggagcgUUGUCCAgcUCc -3'
miRNA:   3'- gCAGCUCGCGCCGC------AGCGGGUacAGc -5'
15852 5' -59.7 NC_004065.1 + 185165 0.7 0.671586
Target:  5'- -cUCGAGCGagaGGCGacgcugcUCcgGCCCGUGUCGc -3'
miRNA:   3'- gcAGCUCGCg--CCGC-------AG--CGGGUACAGC- -5'
15852 5' -59.7 NC_004065.1 + 161644 0.69 0.700968
Target:  5'- --aCGAaCGCGGCGaucuUCGCCUcgGUCGu -3'
miRNA:   3'- gcaGCUcGCGCCGC----AGCGGGuaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 184824 0.68 0.782694
Target:  5'- gCGguggCGgcAGCgGCGGCGUguUGCCCcUGUCGg -3'
miRNA:   3'- -GCa---GC--UCG-CGCCGCA--GCGGGuACAGC- -5'
15852 5' -59.7 NC_004065.1 + 206330 0.69 0.72894
Target:  5'- uGUCGGGCG-GGUGUCugGCCUcgGUaCGg -3'
miRNA:   3'- gCAGCUCGCgCCGCAG--CGGGuaCA-GC- -5'
15852 5' -59.7 NC_004065.1 + 133436 0.7 0.691533
Target:  5'- cCGggGAGUGCaGCGUCGCCaCGcGUCGc -3'
miRNA:   3'- -GCagCUCGCGcCGCAGCGG-GUaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 109839 0.75 0.416091
Target:  5'- aGggCGAGCGCGGCGUCGCUCcccUCa -3'
miRNA:   3'- gCa-GCUCGCGCCGCAGCGGGuacAGc -5'
15852 5' -59.7 NC_004065.1 + 205532 0.68 0.772233
Target:  5'- gCGcUCaGGGCcgGCGGCGgugccaucuacgCGCCCAUGUCc -3'
miRNA:   3'- -GC-AG-CUCG--CGCCGCa-----------GCGGGUACAGc -5'
15852 5' -59.7 NC_004065.1 + 116718 0.71 0.58642
Target:  5'- gCGUCcGGCgcgcgaGCGGCGUCGCCC--GUCa -3'
miRNA:   3'- -GCAGcUCG------CGCCGCAGCGGGuaCAGc -5'
15852 5' -59.7 NC_004065.1 + 121057 0.7 0.672539
Target:  5'- uCGUCgGAGCcUGGCGUCGugcCCCAgGUCGu -3'
miRNA:   3'- -GCAG-CUCGcGCCGCAGC---GGGUaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 65217 0.68 0.773988
Target:  5'- aCGgccaGAGUGcCGGCGguggCGCCCGUcUCGa -3'
miRNA:   3'- -GCag--CUCGC-GCCGCa---GCGGGUAcAGC- -5'
15852 5' -59.7 NC_004065.1 + 117104 0.68 0.791281
Target:  5'- uCG-CGAGCGUGcCG-CGCCCugGUGUCGc -3'
miRNA:   3'- -GCaGCUCGCGCcGCaGCGGG--UACAGC- -5'
15852 5' -59.7 NC_004065.1 + 119507 0.71 0.595954
Target:  5'- aGUCGuGCGCGGCGa-GCCU--GUCGa -3'
miRNA:   3'- gCAGCuCGCGCCGCagCGGGuaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 121644 0.71 0.624669
Target:  5'- gCGUUGAGCGCGuCGUCGUCC---UCGa -3'
miRNA:   3'- -GCAGCUCGCGCcGCAGCGGGuacAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.