miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15852 5' -59.7 NC_004065.1 + 119315 0.69 0.700968
Target:  5'- gGUCGAGgGUGGCGgcucUCGCCC-UGg-- -3'
miRNA:   3'- gCAGCUCgCGCCGC----AGCGGGuACagc -5'
15852 5' -59.7 NC_004065.1 + 35464 0.7 0.662995
Target:  5'- aGUCGAcGCGCuGCGcggUGCCCGUGaCGa -3'
miRNA:   3'- gCAGCU-CGCGcCGCa--GCGGGUACaGC- -5'
15852 5' -59.7 NC_004065.1 + 125139 0.7 0.653429
Target:  5'- cCGUCGcccagccGCGUGGCGaucagcCGCaCCAUGUCGu -3'
miRNA:   3'- -GCAGCu------CGCGCCGCa-----GCG-GGUACAGC- -5'
15852 5' -59.7 NC_004065.1 + 74818 0.7 0.643849
Target:  5'- --aCGAGCGUGGaGaCGCCCggGUCGg -3'
miRNA:   3'- gcaGCUCGCGCCgCaGCGGGuaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 128441 0.71 0.58642
Target:  5'- aGUCuGAGCGCGGCGgaggCGUCCGcgGgcgCGa -3'
miRNA:   3'- gCAG-CUCGCGCCGCa---GCGGGUa-Ca--GC- -5'
15852 5' -59.7 NC_004065.1 + 91127 0.72 0.567446
Target:  5'- uCGcUGAGCGCGGgGUCGuagaaCCCGUGcUCGa -3'
miRNA:   3'- -GCaGCUCGCGCCgCAGC-----GGGUAC-AGC- -5'
15852 5' -59.7 NC_004065.1 + 166145 0.68 0.765171
Target:  5'- aCGUCG-GCGcCGGCGgcagcggCGCCgAcGUCGu -3'
miRNA:   3'- -GCAGCuCGC-GCCGCa------GCGGgUaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 109866 0.68 0.773111
Target:  5'- uGcCGGGCGgugccacCGGCGUCGCCgCGgccgcGUCGg -3'
miRNA:   3'- gCaGCUCGC-------GCCGCAGCGG-GUa----CAGC- -5'
15852 5' -59.7 NC_004065.1 + 184864 0.66 0.869113
Target:  5'- aGUCGAGCggGCGGCGggaCGCCgGgaaCGa -3'
miRNA:   3'- gCAGCUCG--CGCCGCa--GCGGgUacaGC- -5'
15852 5' -59.7 NC_004065.1 + 126224 0.66 0.862082
Target:  5'- cCGUaCGAgGCG-GGCGUcuucaCGCCCGUG-CGg -3'
miRNA:   3'- -GCA-GCU-CGCgCCGCA-----GCGGGUACaGC- -5'
15852 5' -59.7 NC_004065.1 + 98537 0.66 0.861368
Target:  5'- aCGUCGGGagacgccgcccguCGCGGCaUCGUCCucGUCGu -3'
miRNA:   3'- -GCAGCUC-------------GCGCCGcAGCGGGuaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 59889 0.67 0.847478
Target:  5'- uCGUCGGGgucaucaugaGCGGCGUCuGCUCGagaaagacguUGUCGc -3'
miRNA:   3'- -GCAGCUCg---------CGCCGCAG-CGGGU----------ACAGC- -5'
15852 5' -59.7 NC_004065.1 + 132875 0.67 0.839916
Target:  5'- -aUCGGcuuGCGCGGCcagaggGUCGCCU-UGUCGu -3'
miRNA:   3'- gcAGCU---CGCGCCG------CAGCGGGuACAGC- -5'
15852 5' -59.7 NC_004065.1 + 99725 0.67 0.839916
Target:  5'- -aUCGAGCGCccguGGCuGUagaucCCCGUGUCGa -3'
miRNA:   3'- gcAGCUCGCG----CCG-CAgc---GGGUACAGC- -5'
15852 5' -59.7 NC_004065.1 + 207704 0.67 0.839916
Target:  5'- uCGUCGuGCGaCGGgGUCGUCaacGUCa -3'
miRNA:   3'- -GCAGCuCGC-GCCgCAGCGGguaCAGc -5'
15852 5' -59.7 NC_004065.1 + 112979 0.67 0.839916
Target:  5'- aCGuUCGcugaaGGCGCGGUGcagCGUCUcgGUCGg -3'
miRNA:   3'- -GC-AGC-----UCGCGCCGCa--GCGGGuaCAGC- -5'
15852 5' -59.7 NC_004065.1 + 30884 0.67 0.816259
Target:  5'- -uUCGAGCGCccgcagGGCGUCGgggucgcaCUCGUGUCc -3'
miRNA:   3'- gcAGCUCGCG------CCGCAGC--------GGGUACAGc -5'
15852 5' -59.7 NC_004065.1 + 103746 0.67 0.816259
Target:  5'- gCGUCGGuucGCGCGGCGggGCCUccggaccGUCGc -3'
miRNA:   3'- -GCAGCU---CGCGCCGCagCGGGua-----CAGC- -5'
15852 5' -59.7 NC_004065.1 + 131320 0.67 0.80807
Target:  5'- gGUCGAGaaGCugGGCGUC-CCCAUGaCGg -3'
miRNA:   3'- gCAGCUCg-CG--CCGCAGcGGGUACaGC- -5'
15852 5' -59.7 NC_004065.1 + 110846 0.68 0.773988
Target:  5'- ---gGGGCGCGG-GcCGCCCGcGUCGa -3'
miRNA:   3'- gcagCUCGCGCCgCaGCGGGUaCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.