miRNA display CGI


Results 1 - 20 of 198 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15856 3' -51.6 NC_004065.1 + 121138 0.66 0.998077
Target:  5'- gAGCAGGAGAgGA-CGUGcgcuAUGugGAa -3'
miRNA:   3'- gUCGUCUUCUgCUaGCAC----UGCugCUg -5'
15856 3' -51.6 NC_004065.1 + 29948 0.66 0.998077
Target:  5'- gAGgAGGAGACuuuUCGgggaccggugcUGGCGGCGGCg -3'
miRNA:   3'- gUCgUCUUCUGcu-AGC-----------ACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 181117 0.66 0.998077
Target:  5'- -uGCAu--GACGGg-GUGGCGGCGGCg -3'
miRNA:   3'- guCGUcuuCUGCUagCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 142403 0.66 0.998077
Target:  5'- gAGCuGGcgcuGACGAUCGaccUGGCGACG-Cu -3'
miRNA:   3'- gUCGuCUu---CUGCUAGC---ACUGCUGCuG- -5'
15856 3' -51.6 NC_004065.1 + 23615 0.66 0.998077
Target:  5'- aGGCGGGcAGGCGggUG-GACgGGCGGCu -3'
miRNA:   3'- gUCGUCU-UCUGCuaGCaCUG-CUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 161825 0.66 0.998077
Target:  5'- aCGGaCGGAcGGGCGggCG-GACGGgGACg -3'
miRNA:   3'- -GUC-GUCU-UCUGCuaGCaCUGCUgCUG- -5'
15856 3' -51.6 NC_004065.1 + 61234 0.66 0.998043
Target:  5'- gAGCAGAGGGCGGagaggaaggCGUcgaaggccugcgcGGCGuCGACg -3'
miRNA:   3'- gUCGUCUUCUGCUa--------GCA-------------CUGCuGCUG- -5'
15856 3' -51.6 NC_004065.1 + 52836 0.66 0.998043
Target:  5'- cCGGUAGggGAgagccgaCGAUCcUGuCGACGAg -3'
miRNA:   3'- -GUCGUCuuCU-------GCUAGcACuGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 119617 0.66 0.998043
Target:  5'- gCGGCGGAGGAgacgccguCGGcCGUGGCGuguucgaACGGCc -3'
miRNA:   3'- -GUCGUCUUCU--------GCUaGCACUGC-------UGCUG- -5'
15856 3' -51.6 NC_004065.1 + 138702 0.66 0.997867
Target:  5'- aAGC---GGGCGAUCGUGGagcgguccucagguuCGugGACa -3'
miRNA:   3'- gUCGucuUCUGCUAGCACU---------------GCugCUG- -5'
15856 3' -51.6 NC_004065.1 + 57373 0.66 0.997867
Target:  5'- gAGCGacaguuuccuucuccGGAGcucGCGGUCGUcACGGCGGCa -3'
miRNA:   3'- gUCGU---------------CUUC---UGCUAGCAcUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 61636 0.66 0.997718
Target:  5'- uCGGUcuGGAugAGACGGUUGgcgcuggaGACGAUGGCg -3'
miRNA:   3'- -GUCG--UCU--UCUGCUAGCa-------CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 144060 0.66 0.997718
Target:  5'- aAGCAGuuggccuuguGGCGcGUCGagGACGGCGAUg -3'
miRNA:   3'- gUCGUCuu--------CUGC-UAGCa-CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 128572 0.66 0.997718
Target:  5'- gCAGCGGcAG-CGA-CGUcGGCGGCGAa -3'
miRNA:   3'- -GUCGUCuUCuGCUaGCA-CUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 43147 0.66 0.997718
Target:  5'- -cGCGGAAGACacgCGcacgGACGGCGGg -3'
miRNA:   3'- guCGUCUUCUGcuaGCa---CUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 62328 0.66 0.997718
Target:  5'- gCAGCAGA--GC--UCGgaGACGGCGACg -3'
miRNA:   3'- -GUCGUCUucUGcuAGCa-CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 23362 0.66 0.997718
Target:  5'- gUAGCGGAAcccuGCGGUCccGACGAUGAa -3'
miRNA:   3'- -GUCGUCUUc---UGCUAGcaCUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 153617 0.66 0.997718
Target:  5'- uCGGCucGGgcGGCGccacUCG-GACGGCGGCg -3'
miRNA:   3'- -GUCG--UCuuCUGCu---AGCaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 211325 0.66 0.997718
Target:  5'- aCAGCGGcaccuucGACGAcUCG-GugGugGGCg -3'
miRNA:   3'- -GUCGUCuu-----CUGCU-AGCaCugCugCUG- -5'
15856 3' -51.6 NC_004065.1 + 86795 0.66 0.997718
Target:  5'- uUAGC-GAAGACGggCGcGGCGaacGCGGCc -3'
miRNA:   3'- -GUCGuCUUCUGCuaGCaCUGC---UGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.