Results 1 - 20 of 198 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15856 | 3' | -51.6 | NC_004065.1 | + | 57373 | 0.66 | 0.997867 |
Target: 5'- gAGCGacaguuuccuucuccGGAGcucGCGGUCGUcACGGCGGCa -3' miRNA: 3'- gUCGU---------------CUUC---UGCUAGCAcUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 138702 | 0.66 | 0.997867 |
Target: 5'- aAGC---GGGCGAUCGUGGagcgguccucagguuCGugGACa -3' miRNA: 3'- gUCGucuUCUGCUAGCACU---------------GCugCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 8749 | 0.66 | 0.996289 |
Target: 5'- ----cGGAGGCcGUgGUGGCGGCGGCa -3' miRNA: 3'- gucguCUUCUGcUAgCACUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 128572 | 0.66 | 0.997718 |
Target: 5'- gCAGCGGcAG-CGA-CGUcGGCGGCGAa -3' miRNA: 3'- -GUCGUCuUCuGCUaGCA-CUGCUGCUg -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 29948 | 0.66 | 0.998077 |
Target: 5'- gAGgAGGAGACuuuUCGgggaccggugcUGGCGGCGGCg -3' miRNA: 3'- gUCgUCUUCUGcu-AGC-----------ACUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 98108 | 0.66 | 0.996231 |
Target: 5'- -uGCGGguGACGAUCGaagGcaacucgaaccagGCGGCGGCg -3' miRNA: 3'- guCGUCuuCUGCUAGCa--C-------------UGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 161825 | 0.66 | 0.998077 |
Target: 5'- aCGGaCGGAcGGGCGggCG-GACGGgGACg -3' miRNA: 3'- -GUC-GUCU-UCUGCuaGCaCUGCUgCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 61636 | 0.66 | 0.997718 |
Target: 5'- uCGGUcuGGAugAGACGGUUGgcgcuggaGACGAUGGCg -3' miRNA: 3'- -GUCG--UCU--UCUGCUAGCa-------CUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 24832 | 0.66 | 0.997304 |
Target: 5'- -uGguGGAGACGcacgCGgcgcccgauguUGGCGGCGACg -3' miRNA: 3'- guCguCUUCUGCua--GC-----------ACUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 117219 | 0.66 | 0.99683 |
Target: 5'- uGGCGG-GGACGGaCGUcGCGAgCGACa -3' miRNA: 3'- gUCGUCuUCUGCUaGCAcUGCU-GCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 181117 | 0.66 | 0.998077 |
Target: 5'- -uGCAu--GACGGg-GUGGCGGCGGCg -3' miRNA: 3'- guCGUcuuCUGCUagCACUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 61234 | 0.66 | 0.998043 |
Target: 5'- gAGCAGAGGGCGGagaggaaggCGUcgaaggccugcgcGGCGuCGACg -3' miRNA: 3'- gUCGUCUUCUGCUa--------GCA-------------CUGCuGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 72116 | 0.66 | 0.99683 |
Target: 5'- uGGacaGGAGGACGGUgGacGCGGCGAUg -3' miRNA: 3'- gUCg--UCUUCUGCUAgCacUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 114845 | 0.66 | 0.996053 |
Target: 5'- cCGGCAGGaagaggAGACG-UCGgggcgcggcgcccGACGACGAUg -3' miRNA: 3'- -GUCGUCU------UCUGCuAGCa------------CUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 52836 | 0.66 | 0.998043 |
Target: 5'- cCGGUAGggGAgagccgaCGAUCcUGuCGACGAg -3' miRNA: 3'- -GUCGUCuuCU-------GCUAGcACuGCUGCUg -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 121138 | 0.66 | 0.998077 |
Target: 5'- gAGCAGGAGAgGA-CGUGcgcuAUGugGAa -3' miRNA: 3'- gUCGUCUUCUgCUaGCAC----UGCugCUg -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 57449 | 0.66 | 0.996289 |
Target: 5'- -cGCuucuucGACGccGUCGUGGCGAUGGCg -3' miRNA: 3'- guCGucuu--CUGC--UAGCACUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 43147 | 0.66 | 0.997718 |
Target: 5'- -cGCGGAAGACacgCGcacgGACGGCGGg -3' miRNA: 3'- guCGUCUUCUGcuaGCa---CUGCUGCUg -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 33704 | 0.66 | 0.996231 |
Target: 5'- aCAGCAGcGAGAUGG-CGUacuguauGGCGACGGu -3' miRNA: 3'- -GUCGUC-UUCUGCUaGCA-------CUGCUGCUg -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 23615 | 0.66 | 0.998077 |
Target: 5'- aGGCGGGcAGGCGggUG-GACgGGCGGCu -3' miRNA: 3'- gUCGUCU-UCUGCuaGCaCUG-CUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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