Results 41 - 60 of 198 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15856 | 3' | -51.6 | NC_004065.1 | + | 75102 | 0.67 | 0.993682 |
Target: 5'- aGGCAGGAGACGuugcgCGaGACGcgcuccaugcagcgcACGGCg -3' miRNA: 3'- gUCGUCUUCUGCua---GCaCUGC---------------UGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 62369 | 0.67 | 0.993319 |
Target: 5'- aCGGCGGuggcGGCGGggGUGGUGGCGGCg -3' miRNA: 3'- -GUCGUCuu--CUGCUagCACUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 68543 | 0.67 | 0.992337 |
Target: 5'- aGGCGGc-GGCGGagGUGACGGCGuCc -3' miRNA: 3'- gUCGUCuuCUGCUagCACUGCUGCuG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 101854 | 0.67 | 0.992337 |
Target: 5'- gGGCGucGggGGCGcuAUCGccgccgcaGACGACGACg -3' miRNA: 3'- gUCGU--CuuCUGC--UAGCa-------CUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 36161 | 0.67 | 0.993319 |
Target: 5'- uCGGCGGGAGucgccGCGGaCGaaGCGACGGCa -3' miRNA: 3'- -GUCGUCUUC-----UGCUaGCacUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 46902 | 0.67 | 0.993319 |
Target: 5'- aCGGCuGGAGggggccGCGAUgGgucacGACGACGACc -3' miRNA: 3'- -GUCGuCUUC------UGCUAgCa----CUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 48094 | 0.67 | 0.992337 |
Target: 5'- -cGCGGAccuguGGCGGcggCgGUGGCGGCGGCg -3' miRNA: 3'- guCGUCUu----CUGCUa--G-CACUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 59157 | 0.67 | 0.995675 |
Target: 5'- aCGGCgAGAGucCGAUCG-GGCGcGCGGCg -3' miRNA: 3'- -GUCG-UCUUcuGCUAGCaCUGC-UGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 141981 | 0.67 | 0.99498 |
Target: 5'- ----cGGAGGCGAcggCGaUGACGACGAUa -3' miRNA: 3'- gucguCUUCUGCUa--GC-ACUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 65044 | 0.67 | 0.993319 |
Target: 5'- uCGGCAGAAGAccCGAgCGaGACGA-GGCg -3' miRNA: 3'- -GUCGUCUUCU--GCUaGCaCUGCUgCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 138317 | 0.67 | 0.99498 |
Target: 5'- -cGCGGGAGcucGCGGacaUCGUGGCcGCGAUg -3' miRNA: 3'- guCGUCUUC---UGCU---AGCACUGcUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 119065 | 0.67 | 0.99498 |
Target: 5'- aCGGCGaAGGugGAg-GUGACGAgGAUg -3' miRNA: 3'- -GUCGUcUUCugCUagCACUGCUgCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 186714 | 0.67 | 0.995407 |
Target: 5'- gGGcCAGAuGACGAcgucguuuuugucgUCGUcuggucgcgggucGACGACGACg -3' miRNA: 3'- gUC-GUCUuCUGCU--------------AGCA-------------CUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 37333 | 0.67 | 0.994197 |
Target: 5'- aCGGCAGcauaACGAUCGaGGCGAagaCGACa -3' miRNA: 3'- -GUCGUCuuc-UGCUAGCaCUGCU---GCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 139851 | 0.67 | 0.994197 |
Target: 5'- aGGCGGgcGACGG-CGgaGGCGGCGGa -3' miRNA: 3'- gUCGUCuuCUGCUaGCa-CUGCUGCUg -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 89964 | 0.67 | 0.995675 |
Target: 5'- aCGGCuuucuGGGAGcCGGagG-GACGACGACg -3' miRNA: 3'- -GUCG-----UCUUCuGCUagCaCUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 122294 | 0.67 | 0.995675 |
Target: 5'- -uGCAGGAccUGAUCGUcGACG-CGACg -3' miRNA: 3'- guCGUCUUcuGCUAGCA-CUGCuGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 105371 | 0.67 | 0.995675 |
Target: 5'- aCGGCGGAcccGGAC--UCGcUGACGGcCGGCg -3' miRNA: 3'- -GUCGUCU---UCUGcuAGC-ACUGCU-GCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 132157 | 0.67 | 0.995675 |
Target: 5'- gAGCcu-GGACG-UgGUGGCGGCGAUg -3' miRNA: 3'- gUCGucuUCUGCuAgCACUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 216873 | 0.67 | 0.995675 |
Target: 5'- cCGGUuu--GACGGUCGUucGCGGCGGCg -3' miRNA: 3'- -GUCGucuuCUGCUAGCAc-UGCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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