miRNA display CGI


Results 61 - 80 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15856 3' -51.6 NC_004065.1 + 119065 0.67 0.99498
Target:  5'- aCGGCGaAGGugGAg-GUGACGAgGAUg -3'
miRNA:   3'- -GUCGUcUUCugCUagCACUGCUgCUG- -5'
15856 3' -51.6 NC_004065.1 + 122294 0.67 0.995675
Target:  5'- -uGCAGGAccUGAUCGUcGACG-CGACg -3'
miRNA:   3'- guCGUCUUcuGCUAGCA-CUGCuGCUG- -5'
15856 3' -51.6 NC_004065.1 + 156277 0.67 0.993319
Target:  5'- gCGGCcucGGGAGGCGGgaGUaGCGGCGGCa -3'
miRNA:   3'- -GUCG---UCUUCUGCUagCAcUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 65044 0.67 0.993319
Target:  5'- uCGGCAGAAGAccCGAgCGaGACGA-GGCg -3'
miRNA:   3'- -GUCGUCUUCU--GCUaGCaCUGCUgCUG- -5'
15856 3' -51.6 NC_004065.1 + 68543 0.67 0.992337
Target:  5'- aGGCGGc-GGCGGagGUGACGGCGuCc -3'
miRNA:   3'- gUCGUCuuCUGCUagCACUGCUGCuG- -5'
15856 3' -51.6 NC_004065.1 + 139851 0.67 0.994197
Target:  5'- aGGCGGgcGACGG-CGgaGGCGGCGGa -3'
miRNA:   3'- gUCGUCuuCUGCUaGCa-CUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 171792 0.68 0.98382
Target:  5'- uCAGCgAGGAGcCcuUCGUGcGCGGCGACg -3'
miRNA:   3'- -GUCG-UCUUCuGcuAGCAC-UGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 188672 0.68 0.985593
Target:  5'- gCGGCGGGAGACGAcggUCGUcaGGCcgaacuGAUGGCc -3'
miRNA:   3'- -GUCGUCUUCUGCU---AGCA--CUG------CUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 184795 0.68 0.983257
Target:  5'- gGGCGGAGGAgGAcgGUGACGcaacgguggcggugGCGGCa -3'
miRNA:   3'- gUCGUCUUCUgCUagCACUGC--------------UGCUG- -5'
15856 3' -51.6 NC_004065.1 + 30776 0.68 0.98382
Target:  5'- uCGGCGGAcgcGGACGccgaCGaUGACGACuGACg -3'
miRNA:   3'- -GUCGUCU---UCUGCua--GC-ACUGCUG-CUG- -5'
15856 3' -51.6 NC_004065.1 + 19119 0.68 0.990158
Target:  5'- cCGGCcacGAGACGGUcCGgaagaagaugccgagGACGACGACg -3'
miRNA:   3'- -GUCGuc-UUCUGCUA-GCa--------------CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 166136 0.68 0.990031
Target:  5'- uCGGCAG-AGACG-UCGgcgcCGGCGGCa -3'
miRNA:   3'- -GUCGUCuUCUGCuAGCacu-GCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 103524 0.68 0.990031
Target:  5'- -cGCAGAcgcaccccggugGGugGAaacaguUCGUGACGGCG-Ca -3'
miRNA:   3'- guCGUCU------------UCugCU------AGCACUGCUGCuG- -5'
15856 3' -51.6 NC_004065.1 + 104002 0.68 0.990031
Target:  5'- -uGCGGcAAGACugaGUC-UGGCGACGACa -3'
miRNA:   3'- guCGUC-UUCUGc--UAGcACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 64202 0.68 0.98869
Target:  5'- aGGCGGcGGGCGGaggcaGUGuCGGCGGCg -3'
miRNA:   3'- gUCGUCuUCUGCUag---CACuGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 227877 0.68 0.987214
Target:  5'- aCGGgGGGAGACGG-CG-GACGAgGAUc -3'
miRNA:   3'- -GUCgUCUUCUGCUaGCaCUGCUgCUG- -5'
15856 3' -51.6 NC_004065.1 + 41837 0.68 0.985593
Target:  5'- uCAGCGuGcAGGAUGAcgUGUGACGAUGAa -3'
miRNA:   3'- -GUCGU-C-UUCUGCUa-GCACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 168003 0.68 0.985593
Target:  5'- gCAGCAGcgauGGCGAcCGggggaGACGACGAa -3'
miRNA:   3'- -GUCGUCuu--CUGCUaGCa----CUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 156326 0.68 0.985593
Target:  5'- gCGGCGGAGGAgGAggaa-GCGGCGGCa -3'
miRNA:   3'- -GUCGUCUUCUgCUagcacUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 102522 0.68 0.985078
Target:  5'- gCGGCAGAGGACGAcgcgcgccuuguccUCGUcGGUGGCGcCg -3'
miRNA:   3'- -GUCGUCUUCUGCU--------------AGCA-CUGCUGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.