Results 21 - 40 of 198 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15856 | 3' | -51.6 | NC_004065.1 | + | 109227 | 0.73 | 0.891472 |
Target: 5'- uCGGCgacGGGAGACGGcggcgguagcggcgUCgGUGACGAUGACg -3' miRNA: 3'- -GUCG---UCUUCUGCU--------------AG-CACUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 205431 | 0.73 | 0.872597 |
Target: 5'- cCGGCGGc-GGCGGUgGcGGCGACGACa -3' miRNA: 3'- -GUCGUCuuCUGCUAgCaCUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 75777 | 0.73 | 0.886734 |
Target: 5'- aGGCGGAGGcgGCGGUCGgcgaggggGAgCGGCGGCg -3' miRNA: 3'- gUCGUCUUC--UGCUAGCa-------CU-GCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 71728 | 0.73 | 0.879775 |
Target: 5'- cCAGCAGAAuGCGAcgGUGACG-CGGCg -3' miRNA: 3'- -GUCGUCUUcUGCUagCACUGCuGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 56102 | 0.73 | 0.872597 |
Target: 5'- gCAGCAGAcguGACcGUCccgGACGACGGCg -3' miRNA: 3'- -GUCGUCUu--CUGcUAGca-CUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 111752 | 0.73 | 0.899976 |
Target: 5'- aAGaGGAGGACGAg---GACGACGACg -3' miRNA: 3'- gUCgUCUUCUGCUagcaCUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 175905 | 0.73 | 0.893469 |
Target: 5'- uGGgAGAcGAUGAUCGUcgcGGCGAUGACg -3' miRNA: 3'- gUCgUCUuCUGCUAGCA---CUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 202245 | 0.73 | 0.872597 |
Target: 5'- gGGCAGGAGGCccUCcaGACGGCGGCg -3' miRNA: 3'- gUCGUCUUCUGcuAGcaCUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 79542 | 0.73 | 0.893469 |
Target: 5'- gCGGgAGAAGGCGGUCGaugcGGCGcaGCGGCg -3' miRNA: 3'- -GUCgUCUUCUGCUAGCa---CUGC--UGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 43274 | 0.73 | 0.872597 |
Target: 5'- aAGgGGggGAUGuccggCGUGGCGACGAa -3' miRNA: 3'- gUCgUCuuCUGCua---GCACUGCUGCUg -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 133708 | 0.73 | 0.879775 |
Target: 5'- gAGCccuuGGAccccgAGACGGagUCGUGugGACGGCg -3' miRNA: 3'- gUCG----UCU-----UCUGCU--AGCACugCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 207231 | 0.73 | 0.893469 |
Target: 5'- aUAGCgacGGuGGcCGGUCGUGAgGACGACg -3' miRNA: 3'- -GUCG---UCuUCuGCUAGCACUgCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 110970 | 0.72 | 0.923671 |
Target: 5'- gCAGCuGAGGACGGgucagagcgUCGUGuuGACGAg -3' miRNA: 3'- -GUCGuCUUCUGCU---------AGCACugCUGCUg -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 186170 | 0.72 | 0.918101 |
Target: 5'- -uGCAGAAGAUGAaCGaguUGGCGAuCGACu -3' miRNA: 3'- guCGUCUUCUGCUaGC---ACUGCU-GCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 83110 | 0.72 | 0.906252 |
Target: 5'- gCGGCGGAAGAUGcgCGgggagcUGugGGCGAg -3' miRNA: 3'- -GUCGUCUUCUGCuaGC------ACugCUGCUg -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 149934 | 0.72 | 0.906252 |
Target: 5'- uCGGCAGGAGGCGggCuUGAUccacaGACGGCg -3' miRNA: 3'- -GUCGUCUUCUGCuaGcACUG-----CUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 84897 | 0.72 | 0.912294 |
Target: 5'- -cGUAGggGguguuggaccuaGCuuUCGUGACGACGACg -3' miRNA: 3'- guCGUCuuC------------UGcuAGCACUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 130743 | 0.72 | 0.918101 |
Target: 5'- gCGGUGGGaucGGACGAggaGgagGACGACGACg -3' miRNA: 3'- -GUCGUCU---UCUGCUag-Ca--CUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 135141 | 0.72 | 0.912294 |
Target: 5'- gCGGCGGGugauGACGAcggggacgUCGaUGACGACGAg -3' miRNA: 3'- -GUCGUCUu---CUGCU--------AGC-ACUGCUGCUg -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 96748 | 0.72 | 0.918101 |
Target: 5'- gGGC-GAGGGCGAgcagGGCGACGGCg -3' miRNA: 3'- gUCGuCUUCUGCUagcaCUGCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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