miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15856 3' -51.6 NC_004065.1 + 80941 1.09 0.012393
Target:  5'- cCAGCAGAAGACGAUCGUGACGACGACc -3'
miRNA:   3'- -GUCGUCUUCUGCUAGCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 176326 0.81 0.502392
Target:  5'- gGGaGGAGGGCGGUCG-GGCGGCGACa -3'
miRNA:   3'- gUCgUCUUCUGCUAGCaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 40734 0.8 0.551501
Target:  5'- gCGGCAGAgguagacgAGACGAUUGUGcACGAgGACg -3'
miRNA:   3'- -GUCGUCU--------UCUGCUAGCAC-UGCUgCUG- -5'
15856 3' -51.6 NC_004065.1 + 98396 0.79 0.581668
Target:  5'- uGGCgaGGAGGGCGAUgagaGUGGCGGCGGCa -3'
miRNA:   3'- gUCG--UCUUCUGCUAg---CACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 222292 0.79 0.591804
Target:  5'- aGGUAGAuguacacGACGAUCGUGACGAUGGu -3'
miRNA:   3'- gUCGUCUu------CUGCUAGCACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 209700 0.79 0.601969
Target:  5'- uGGUAGggGAUGggUGUGGCGAUGAUa -3'
miRNA:   3'- gUCGUCuuCUGCuaGCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 212065 0.77 0.683452
Target:  5'- gCGGCAGAcGGACGAcCGUcACGGCGACc -3'
miRNA:   3'- -GUCGUCU-UCUGCUaGCAcUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 171978 0.77 0.713543
Target:  5'- gCGGCGGAGGGguCG-UCGUGAaCGACGACc -3'
miRNA:   3'- -GUCGUCUUCU--GCuAGCACU-GCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 75456 0.76 0.752654
Target:  5'- cCAGUAGAggagccagagcaGGACGAgggCGaUGGCGGCGGCg -3'
miRNA:   3'- -GUCGUCU------------UCUGCUa--GC-ACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 182348 0.76 0.762191
Target:  5'- uCGGUGGAcGACGAUUccGACGACGACu -3'
miRNA:   3'- -GUCGUCUuCUGCUAGcaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 111967 0.76 0.771613
Target:  5'- gGGUGGAGGACGAagaCGUGuACGACGAg -3'
miRNA:   3'- gUCGUCUUCUGCUa--GCAC-UGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 105450 0.75 0.807972
Target:  5'- uGGCGacGGACGAgaaCGUGACGGCGAa -3'
miRNA:   3'- gUCGUcuUCUGCUa--GCACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 80787 0.75 0.816687
Target:  5'- gAGCAGgcGACGG-CGgcGGCGGCGGCg -3'
miRNA:   3'- gUCGUCuuCUGCUaGCa-CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 130003 0.75 0.825234
Target:  5'- gCGGCGGAcgAGGCGAUgcUGUacGGCGGCGGCg -3'
miRNA:   3'- -GUCGUCU--UCUGCUA--GCA--CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 109109 0.74 0.840987
Target:  5'- gGGCGGAggagaggGGACGGagGUGGCGGgGACg -3'
miRNA:   3'- gUCGUCU-------UCUGCUagCACUGCUgCUG- -5'
15856 3' -51.6 NC_004065.1 + 65809 0.74 0.841798
Target:  5'- -cGCGGAucgAGGCGAUCGUGAacGCGAUg -3'
miRNA:   3'- guCGUCU---UCUGCUAGCACUgcUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 113916 0.74 0.857603
Target:  5'- gGGCGG-AGAuCGcgCGUGuCGACGACg -3'
miRNA:   3'- gUCGUCuUCU-GCuaGCACuGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 3568 0.74 0.865204
Target:  5'- uGGCAGAAGGCGAgcccggucUCGaucGGCGAgGACu -3'
miRNA:   3'- gUCGUCUUCUGCU--------AGCa--CUGCUgCUG- -5'
15856 3' -51.6 NC_004065.1 + 43274 0.73 0.872597
Target:  5'- aAGgGGggGAUGuccggCGUGGCGACGAa -3'
miRNA:   3'- gUCgUCuuCUGCua---GCACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 56102 0.73 0.872597
Target:  5'- gCAGCAGAcguGACcGUCccgGACGACGGCg -3'
miRNA:   3'- -GUCGUCUu--CUGcUAGca-CUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.