miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15856 3' -51.6 NC_004065.1 + 205431 0.73 0.872597
Target:  5'- cCGGCGGc-GGCGGUgGcGGCGACGACa -3'
miRNA:   3'- -GUCGUCuuCUGCUAgCaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 202245 0.73 0.872597
Target:  5'- gGGCAGGAGGCccUCcaGACGGCGGCg -3'
miRNA:   3'- gUCGUCUUCUGcuAGcaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 133708 0.73 0.879775
Target:  5'- gAGCccuuGGAccccgAGACGGagUCGUGugGACGGCg -3'
miRNA:   3'- gUCG----UCU-----UCUGCU--AGCACugCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 71728 0.73 0.879775
Target:  5'- cCAGCAGAAuGCGAcgGUGACG-CGGCg -3'
miRNA:   3'- -GUCGUCUUcUGCUagCACUGCuGCUG- -5'
15856 3' -51.6 NC_004065.1 + 75777 0.73 0.886734
Target:  5'- aGGCGGAGGcgGCGGUCGgcgaggggGAgCGGCGGCg -3'
miRNA:   3'- gUCGUCUUC--UGCUAGCa-------CU-GCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 109227 0.73 0.891472
Target:  5'- uCGGCgacGGGAGACGGcggcgguagcggcgUCgGUGACGAUGACg -3'
miRNA:   3'- -GUCG---UCUUCUGCU--------------AG-CACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 207231 0.73 0.893469
Target:  5'- aUAGCgacGGuGGcCGGUCGUGAgGACGACg -3'
miRNA:   3'- -GUCG---UCuUCuGCUAGCACUgCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 175905 0.73 0.893469
Target:  5'- uGGgAGAcGAUGAUCGUcgcGGCGAUGACg -3'
miRNA:   3'- gUCgUCUuCUGCUAGCA---CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 79542 0.73 0.893469
Target:  5'- gCGGgAGAAGGCGGUCGaugcGGCGcaGCGGCg -3'
miRNA:   3'- -GUCgUCUUCUGCUAGCa---CUGC--UGCUG- -5'
15856 3' -51.6 NC_004065.1 + 71564 0.73 0.899976
Target:  5'- ---gGGGAGAgGcgCGUGAUGACGGCa -3'
miRNA:   3'- gucgUCUUCUgCuaGCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 142009 0.73 0.899976
Target:  5'- gCGGCGGAucgucGACGAcgUCGUcGuCGACGACg -3'
miRNA:   3'- -GUCGUCUu----CUGCU--AGCA-CuGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 111752 0.73 0.899976
Target:  5'- aAGaGGAGGACGAg---GACGACGACg -3'
miRNA:   3'- gUCgUCUUCUGCUagcaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 149934 0.72 0.906252
Target:  5'- uCGGCAGGAGGCGggCuUGAUccacaGACGGCg -3'
miRNA:   3'- -GUCGUCUUCUGCuaGcACUG-----CUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 83110 0.72 0.906252
Target:  5'- gCGGCGGAAGAUGcgCGgggagcUGugGGCGAg -3'
miRNA:   3'- -GUCGUCUUCUGCuaGC------ACugCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 84897 0.72 0.912294
Target:  5'- -cGUAGggGguguuggaccuaGCuuUCGUGACGACGACg -3'
miRNA:   3'- guCGUCuuC------------UGcuAGCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 135141 0.72 0.912294
Target:  5'- gCGGCGGGugauGACGAcggggacgUCGaUGACGACGAg -3'
miRNA:   3'- -GUCGUCUu---CUGCU--------AGC-ACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 96748 0.72 0.918101
Target:  5'- gGGC-GAGGGCGAgcagGGCGACGGCg -3'
miRNA:   3'- gUCGuCUUCUGCUagcaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 186170 0.72 0.918101
Target:  5'- -uGCAGAAGAUGAaCGaguUGGCGAuCGACu -3'
miRNA:   3'- guCGUCUUCUGCUaGC---ACUGCU-GCUG- -5'
15856 3' -51.6 NC_004065.1 + 130743 0.72 0.918101
Target:  5'- gCGGUGGGaucGGACGAggaGgagGACGACGACg -3'
miRNA:   3'- -GUCGUCU---UCUGCUag-Ca--CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 110970 0.72 0.923671
Target:  5'- gCAGCuGAGGACGGgucagagcgUCGUGuuGACGAg -3'
miRNA:   3'- -GUCGuCUUCUGCU---------AGCACugCUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.