miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15856 3' -51.6 NC_004065.1 + 121283 0.72 0.923671
Target:  5'- gGGCuuGAAGACccgCGUGAgGGCGACg -3'
miRNA:   3'- gUCGu-CUUCUGcuaGCACUgCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 110970 0.72 0.923671
Target:  5'- gCAGCuGAGGACGGgucagagcgUCGUGuuGACGAg -3'
miRNA:   3'- -GUCGuCUUCUGCU---------AGCACugCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 211516 0.72 0.929002
Target:  5'- uCGGCucuGAGGGuCG-UCgGUGGCGACGACg -3'
miRNA:   3'- -GUCGu--CUUCU-GCuAG-CACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 119952 0.71 0.938953
Target:  5'- aGGCAGAGGACGGcCGUGAgCccCGACc -3'
miRNA:   3'- gUCGUCUUCUGCUaGCACU-GcuGCUG- -5'
15856 3' -51.6 NC_004065.1 + 171951 0.71 0.938953
Target:  5'- -cGCGcAAGGCGggCgGUGGCGGCGGCg -3'
miRNA:   3'- guCGUcUUCUGCuaG-CACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 193611 0.71 0.938953
Target:  5'- aCAGCgucuagugaAGAGGAUGAaagcgaaaGUGGCGGCGGCa -3'
miRNA:   3'- -GUCG---------UCUUCUGCUag------CACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 143315 0.71 0.938953
Target:  5'- gGGCAGGAGGgGAagagggggCGggGGCGGCGGCa -3'
miRNA:   3'- gUCGUCUUCUgCUa-------GCa-CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 69568 0.71 0.941753
Target:  5'- aAGCugcuGAAGACGAgcugggguaagccCGUGGCGACGGu -3'
miRNA:   3'- gUCGu---CUUCUGCUa------------GCACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 79814 0.71 0.943573
Target:  5'- cCGGgGGAAGACGGgcaugagcgugUUGUGACGGCcuuGACg -3'
miRNA:   3'- -GUCgUCUUCUGCU-----------AGCACUGCUG---CUG- -5'
15856 3' -51.6 NC_004065.1 + 217189 0.71 0.943573
Target:  5'- gAGguGGuuGGGCGAUCGUuaGGCG-CGACa -3'
miRNA:   3'- gUCguCU--UCUGCUAGCA--CUGCuGCUG- -5'
15856 3' -51.6 NC_004065.1 + 103510 0.71 0.943573
Target:  5'- gAGCAcGGGACGAUCGcgcggcgcaUGGCGACG-Cg -3'
miRNA:   3'- gUCGUcUUCUGCUAGC---------ACUGCUGCuG- -5'
15856 3' -51.6 NC_004065.1 + 119490 0.71 0.943573
Target:  5'- gCAGUGGAAGagaGCGAagUCGUGcGCGGCGAg -3'
miRNA:   3'- -GUCGUCUUC---UGCU--AGCAC-UGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 173403 0.71 0.947958
Target:  5'- gCAGUAGAGGAUGAUguUGAUGAUGGg -3'
miRNA:   3'- -GUCGUCUUCUGCUAgcACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 187234 0.71 0.947958
Target:  5'- aAGgAGAAGAgGAUgaCGaaggGACGACGACg -3'
miRNA:   3'- gUCgUCUUCUgCUA--GCa---CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 146888 0.7 0.956038
Target:  5'- gCGGCAGu-GACGAuUCGgguaaGGCGugGACu -3'
miRNA:   3'- -GUCGUCuuCUGCU-AGCa----CUGCugCUG- -5'
15856 3' -51.6 NC_004065.1 + 103838 0.7 0.956038
Target:  5'- gAGCAaGGAGaACGc-CGUGACGGCGAUc -3'
miRNA:   3'- gUCGU-CUUC-UGCuaGCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 19045 0.7 0.956038
Target:  5'- aCGGCGGcGGugGcccacAUCuGUGACGACGAg -3'
miRNA:   3'- -GUCGUCuUCugC-----UAG-CACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 165455 0.7 0.956038
Target:  5'- uGGCAGuGGAUGAUCuUGAUGACcGCg -3'
miRNA:   3'- gUCGUCuUCUGCUAGcACUGCUGcUG- -5'
15856 3' -51.6 NC_004065.1 + 79344 0.7 0.956038
Target:  5'- -cGCGGAGGACGAggGcGGCG-CGGCg -3'
miRNA:   3'- guCGUCUUCUGCUagCaCUGCuGCUG- -5'
15856 3' -51.6 NC_004065.1 + 55783 0.7 0.956038
Target:  5'- uCGGCGccGAgcAGGCGAUCGcGGCuGACGACc -3'
miRNA:   3'- -GUCGU--CU--UCUGCUAGCaCUG-CUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.