Results 61 - 80 of 198 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15856 | 3' | -51.6 | NC_004065.1 | + | 62063 | 0.7 | 0.959739 |
Target: 5'- gCGGCAGguGAgGAuUCGgauucaggGGCGACGGCa -3' miRNA: 3'- -GUCGUCuuCUgCU-AGCa-------CUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 10890 | 0.7 | 0.959739 |
Target: 5'- -cGCAGGAG-CGAcCaUGugGACGACg -3' miRNA: 3'- guCGUCUUCuGCUaGcACugCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 115598 | 0.7 | 0.959739 |
Target: 5'- gCGGCGGGAGAUGAUacUGAacaccgucCGGCGGCa -3' miRNA: 3'- -GUCGUCUUCUGCUAgcACU--------GCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 154112 | 0.7 | 0.961157 |
Target: 5'- gCAGCAugggGAucguguguccacaugGGACGAUCGccccgggcggUGGCGGCGGCg -3' miRNA: 3'- -GUCGU----CU---------------UCUGCUAGC----------ACUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 66259 | 0.7 | 0.96322 |
Target: 5'- gGGCAaGAAcGA-GAUCGUGACGAUGGu -3' miRNA: 3'- gUCGU-CUU-CUgCUAGCACUGCUGCUg -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 138547 | 0.7 | 0.96322 |
Target: 5'- gCGGCAcGAGcGGCGG-CGgacUGACGGCGACg -3' miRNA: 3'- -GUCGU-CUU-CUGCUaGC---ACUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 139622 | 0.7 | 0.96322 |
Target: 5'- -cGCAGAugcGGAgCGGUggCGUGuCGACGACg -3' miRNA: 3'- guCGUCU---UCU-GCUA--GCACuGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 63069 | 0.7 | 0.966485 |
Target: 5'- -cGCAGGAGucgcCGGUCGccGGCGAgCGACg -3' miRNA: 3'- guCGUCUUCu---GCUAGCa-CUGCU-GCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 151425 | 0.7 | 0.966485 |
Target: 5'- gCGGCGcGAcGACGucgCGUucGACGGCGACg -3' miRNA: 3'- -GUCGU-CUuCUGCua-GCA--CUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 38448 | 0.7 | 0.966485 |
Target: 5'- gCGGCAGGAGGCucAUCGgcacacugGugGugGGCa -3' miRNA: 3'- -GUCGUCUUCUGc-UAGCa-------CugCugCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 189641 | 0.7 | 0.966485 |
Target: 5'- aCGGCGGAGGAccCGGagGacaUGACGACGAg -3' miRNA: 3'- -GUCGUCUUCU--GCUagC---ACUGCUGCUg -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 148876 | 0.7 | 0.969243 |
Target: 5'- gCGGCGGggGGCGAgggggacgaaaccUCG-GAgGGCGAg -3' miRNA: 3'- -GUCGUCuuCUGCU-------------AGCaCUgCUGCUg -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 44653 | 0.7 | 0.96954 |
Target: 5'- -cGCuucGAAGACGAcggcgUCGUcGGCGACGAa -3' miRNA: 3'- guCGu--CUUCUGCU-----AGCA-CUGCUGCUg -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 202604 | 0.69 | 0.97239 |
Target: 5'- gGGCAGAGGcuggguGCGAUgaggaGUcGACGACGAUg -3' miRNA: 3'- gUCGUCUUC------UGCUAg----CA-CUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 114736 | 0.69 | 0.97239 |
Target: 5'- gCGGCGGAGcccuccCGAuUCG-GACGACGACg -3' miRNA: 3'- -GUCGUCUUcu----GCU-AGCaCUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 149047 | 0.69 | 0.97239 |
Target: 5'- gAGCGGgcGACGAc---GGCGGCGGCa -3' miRNA: 3'- gUCGUCuuCUGCUagcaCUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 185439 | 0.69 | 0.97239 |
Target: 5'- gGGaggaGGAGGACGAggaGUGAUGAUGAa -3' miRNA: 3'- gUCg---UCUUCUGCUag-CACUGCUGCUg -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 67461 | 0.69 | 0.975044 |
Target: 5'- uCGGCcgAGgcGGCGGUguaCGUGuGCGACGACu -3' miRNA: 3'- -GUCG--UCuuCUGCUA---GCAC-UGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 38424 | 0.69 | 0.975044 |
Target: 5'- -cGCGGGAGAgGG-CGUcuACGACGACg -3' miRNA: 3'- guCGUCUUCUgCUaGCAc-UGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 64533 | 0.69 | 0.975044 |
Target: 5'- gCAGCAGcu-GCGG-CGcGACGGCGACa -3' miRNA: 3'- -GUCGUCuucUGCUaGCaCUGCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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