miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15856 3' -51.6 NC_004065.1 + 24832 0.66 0.997304
Target:  5'- -uGguGGAGACGcacgCGgcgcccgauguUGGCGGCGACg -3'
miRNA:   3'- guCguCUUCUGCua--GC-----------ACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 53873 0.66 0.997304
Target:  5'- uCAGCAGAcGGACGcuccUCGUccgaaGAaggaGACGACg -3'
miRNA:   3'- -GUCGUCU-UCUGCu---AGCA-----CUg---CUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 118891 0.66 0.997304
Target:  5'- gGGCAGAcGACGcgCacgagccaGAUGGCGACg -3'
miRNA:   3'- gUCGUCUuCUGCuaGca------CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 40976 0.66 0.997304
Target:  5'- --cCAGAAGAuCGAgacggCGUGguugaACGACGACu -3'
miRNA:   3'- gucGUCUUCU-GCUa----GCAC-----UGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 75571 0.66 0.99683
Target:  5'- uCGGCGGccguGACGuUCGUGuCGcCGGCg -3'
miRNA:   3'- -GUCGUCuu--CUGCuAGCACuGCuGCUG- -5'
15856 3' -51.6 NC_004065.1 + 153255 0.66 0.99683
Target:  5'- -cGCGGc-GGCGAUgCGccgGACGAUGACg -3'
miRNA:   3'- guCGUCuuCUGCUA-GCa--CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 72116 0.66 0.99683
Target:  5'- uGGacaGGAGGACGGUgGacGCGGCGAUg -3'
miRNA:   3'- gUCg--UCUUCUGCUAgCacUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 198775 0.66 0.99683
Target:  5'- -cGCAG-AGACGAUCG-GAC-ACGGu -3'
miRNA:   3'- guCGUCuUCUGCUAGCaCUGcUGCUg -5'
15856 3' -51.6 NC_004065.1 + 117219 0.66 0.99683
Target:  5'- uGGCGG-GGACGGaCGUcGCGAgCGACa -3'
miRNA:   3'- gUCGUCuUCUGCUaGCAcUGCU-GCUG- -5'
15856 3' -51.6 NC_004065.1 + 129489 0.66 0.996779
Target:  5'- gCGGCAGAgaaaaagaagacgAGACGcgCGUGugcCGGCG-Ca -3'
miRNA:   3'- -GUCGUCU-------------UCUGCuaGCACu--GCUGCuG- -5'
15856 3' -51.6 NC_004065.1 + 8749 0.66 0.996289
Target:  5'- ----cGGAGGCcGUgGUGGCGGCGGCa -3'
miRNA:   3'- gucguCUUCUGcUAgCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 139881 0.66 0.996289
Target:  5'- gCGGCAGGacGGACGAg-GUGGCcGCGGg -3'
miRNA:   3'- -GUCGUCU--UCUGCUagCACUGcUGCUg -5'
15856 3' -51.6 NC_004065.1 + 57449 0.66 0.996289
Target:  5'- -cGCuucuucGACGccGUCGUGGCGAUGGCg -3'
miRNA:   3'- guCGucuu--CUGC--UAGCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 33704 0.66 0.996231
Target:  5'- aCAGCAGcGAGAUGG-CGUacuguauGGCGACGGu -3'
miRNA:   3'- -GUCGUC-UUCUGCUaGCA-------CUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 98108 0.66 0.996231
Target:  5'- -uGCGGguGACGAUCGaagGcaacucgaaccagGCGGCGGCg -3'
miRNA:   3'- guCGUCuuCUGCUAGCa--C-------------UGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 114845 0.66 0.996053
Target:  5'- cCGGCAGGaagaggAGACG-UCGgggcgcggcgcccGACGACGAUg -3'
miRNA:   3'- -GUCGUCU------UCUGCuAGCa------------CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 216873 0.67 0.995675
Target:  5'- cCGGUuu--GACGGUCGUucGCGGCGGCg -3'
miRNA:   3'- -GUCGucuuCUGCUAGCAc-UGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 132157 0.67 0.995675
Target:  5'- gAGCcu-GGACG-UgGUGGCGGCGAUg -3'
miRNA:   3'- gUCGucuUCUGCuAgCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 59157 0.67 0.995675
Target:  5'- aCGGCgAGAGucCGAUCG-GGCGcGCGGCg -3'
miRNA:   3'- -GUCG-UCUUcuGCUAGCaCUGC-UGCUG- -5'
15856 3' -51.6 NC_004065.1 + 122294 0.67 0.995675
Target:  5'- -uGCAGGAccUGAUCGUcGACG-CGACg -3'
miRNA:   3'- guCGUCUUcuGCUAGCA-CUGCuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.