miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15856 3' -51.6 NC_004065.1 + 105371 0.67 0.995675
Target:  5'- aCGGCGGAcccGGAC--UCGcUGACGGcCGGCg -3'
miRNA:   3'- -GUCGUCU---UCUGcuAGC-ACUGCU-GCUG- -5'
15856 3' -51.6 NC_004065.1 + 122294 0.67 0.995675
Target:  5'- -uGCAGGAccUGAUCGUcGACG-CGACg -3'
miRNA:   3'- guCGUCUUcuGCUAGCA-CUGCuGCUG- -5'
15856 3' -51.6 NC_004065.1 + 89964 0.67 0.995675
Target:  5'- aCGGCuuucuGGGAGcCGGagG-GACGACGACg -3'
miRNA:   3'- -GUCG-----UCUUCuGCUagCaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 186714 0.67 0.995407
Target:  5'- gGGcCAGAuGACGAcgucguuuuugucgUCGUcuggucgcgggucGACGACGACg -3'
miRNA:   3'- gUC-GUCUuCUGCU--------------AGCA-------------CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 223868 0.67 0.99498
Target:  5'- gAGUAGcGAGGCGAUCacggaGAUGACGAg -3'
miRNA:   3'- gUCGUC-UUCUGCUAGca---CUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 119065 0.67 0.99498
Target:  5'- aCGGCGaAGGugGAg-GUGACGAgGAUg -3'
miRNA:   3'- -GUCGUcUUCugCUagCACUGCUgCUG- -5'
15856 3' -51.6 NC_004065.1 + 141981 0.67 0.99498
Target:  5'- ----cGGAGGCGAcggCGaUGACGACGAUa -3'
miRNA:   3'- gucguCUUCUGCUa--GC-ACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 138317 0.67 0.99498
Target:  5'- -cGCGGGAGcucGCGGacaUCGUGGCcGCGAUg -3'
miRNA:   3'- guCGUCUUC---UGCU---AGCACUGcUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 88727 0.67 0.994521
Target:  5'- gAGCGGcGGAUGAgcacguccaccagcuUgGUGGCGAUGAUg -3'
miRNA:   3'- gUCGUCuUCUGCU---------------AgCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 96698 0.67 0.994197
Target:  5'- gGGCgAGggGACGAa---GACGGCGAUu -3'
miRNA:   3'- gUCG-UCuuCUGCUagcaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 67748 0.67 0.994197
Target:  5'- gAGCGGcgccgcguccGACGG-CGUGACGaACGGCg -3'
miRNA:   3'- gUCGUCuu--------CUGCUaGCACUGC-UGCUG- -5'
15856 3' -51.6 NC_004065.1 + 152305 0.67 0.994197
Target:  5'- gCGGCGGc-GGCGGUgcCGgcgggGACGAUGACg -3'
miRNA:   3'- -GUCGUCuuCUGCUA--GCa----CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 202604 0.67 0.994197
Target:  5'- -cGCGGGcGGAC-AUCGUGACGGCa-- -3'
miRNA:   3'- guCGUCU-UCUGcUAGCACUGCUGcug -5'
15856 3' -51.6 NC_004065.1 + 139851 0.67 0.994197
Target:  5'- aGGCGGgcGACGG-CGgaGGCGGCGGa -3'
miRNA:   3'- gUCGUCuuCUGCUaGCa-CUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 37333 0.67 0.994197
Target:  5'- aCGGCAGcauaACGAUCGaGGCGAagaCGACa -3'
miRNA:   3'- -GUCGUCuuc-UGCUAGCaCUGCU---GCUG- -5'
15856 3' -51.6 NC_004065.1 + 75102 0.67 0.993682
Target:  5'- aGGCAGGAGACGuugcgCGaGACGcgcuccaugcagcgcACGGCg -3'
miRNA:   3'- gUCGUCUUCUGCua---GCaCUGC---------------UGCUG- -5'
15856 3' -51.6 NC_004065.1 + 62369 0.67 0.993319
Target:  5'- aCGGCGGuggcGGCGGggGUGGUGGCGGCg -3'
miRNA:   3'- -GUCGUCuu--CUGCUagCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 46902 0.67 0.993319
Target:  5'- aCGGCuGGAGggggccGCGAUgGgucacGACGACGACc -3'
miRNA:   3'- -GUCGuCUUC------UGCUAgCa----CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 36161 0.67 0.993319
Target:  5'- uCGGCGGGAGucgccGCGGaCGaaGCGACGGCa -3'
miRNA:   3'- -GUCGUCUUC-----UGCUaGCacUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 65044 0.67 0.993319
Target:  5'- uCGGCAGAAGAccCGAgCGaGACGA-GGCg -3'
miRNA:   3'- -GUCGUCUUCU--GCUaGCaCUGCUgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.