miRNA display CGI


Results 61 - 80 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15856 3' -51.6 NC_004065.1 + 65044 0.67 0.993319
Target:  5'- uCGGCAGAAGAccCGAgCGaGACGA-GGCg -3'
miRNA:   3'- -GUCGUCUUCU--GCUaGCaCUGCUgCUG- -5'
15856 3' -51.6 NC_004065.1 + 156277 0.67 0.993319
Target:  5'- gCGGCcucGGGAGGCGGgaGUaGCGGCGGCa -3'
miRNA:   3'- -GUCG---UCUUCUGCUagCAcUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 168547 0.67 0.993319
Target:  5'- gCGGCGGuGGugGcagCGgcggcGGCGGCGACa -3'
miRNA:   3'- -GUCGUCuUCugCua-GCa----CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 101854 0.67 0.992337
Target:  5'- gGGCGucGggGGCGcuAUCGccgccgcaGACGACGACg -3'
miRNA:   3'- gUCGU--CuuCUGC--UAGCa-------CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 68543 0.67 0.992337
Target:  5'- aGGCGGc-GGCGGagGUGACGGCGuCc -3'
miRNA:   3'- gUCGUCuuCUGCUagCACUGCUGCuG- -5'
15856 3' -51.6 NC_004065.1 + 48094 0.67 0.992337
Target:  5'- -cGCGGAccuguGGCGGcggCgGUGGCGGCGGCg -3'
miRNA:   3'- guCGUCUu----CUGCUa--G-CACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 142495 0.68 0.991244
Target:  5'- cCAGgGGguGGCGGUC-UGuCGACGGCu -3'
miRNA:   3'- -GUCgUCuuCUGCUAGcACuGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 114835 0.68 0.990893
Target:  5'- gCGGCGGccacggccggauccAGGGCcAUCcUGGCGACGACg -3'
miRNA:   3'- -GUCGUC--------------UUCUGcUAGcACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 127532 0.68 0.990893
Target:  5'- aGGCAGAggAGAUGGUaguaguggccgCGUaggaggaggaagaaGACGACGACg -3'
miRNA:   3'- gUCGUCU--UCUGCUA-----------GCA--------------CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 65343 0.68 0.990531
Target:  5'- gCAGCAGcugcGGGugGGUCGgucggaucgaccugGGCGACGcGCg -3'
miRNA:   3'- -GUCGUC----UUCugCUAGCa-------------CUGCUGC-UG- -5'
15856 3' -51.6 NC_004065.1 + 19119 0.68 0.990158
Target:  5'- cCGGCcacGAGACGGUcCGgaagaagaugccgagGACGACGACg -3'
miRNA:   3'- -GUCGuc-UUCUGCUA-GCa--------------CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 58580 0.68 0.990031
Target:  5'- cCAGCGGAuGA-GcUCGccGACGACGGCg -3'
miRNA:   3'- -GUCGUCUuCUgCuAGCa-CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 197212 0.68 0.990031
Target:  5'- gAGCGGcccGACGGcuaCGagGACGACGACa -3'
miRNA:   3'- gUCGUCuu-CUGCUa--GCa-CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 104002 0.68 0.990031
Target:  5'- -uGCGGcAAGACugaGUC-UGGCGACGACa -3'
miRNA:   3'- guCGUC-UUCUGc--UAGcACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 151404 0.68 0.990031
Target:  5'- uGGCGGAGGcggguCGGUCGggGugGuCGACc -3'
miRNA:   3'- gUCGUCUUCu----GCUAGCa-CugCuGCUG- -5'
15856 3' -51.6 NC_004065.1 + 103524 0.68 0.990031
Target:  5'- -cGCAGAcgcaccccggugGGugGAaacaguUCGUGACGGCG-Ca -3'
miRNA:   3'- guCGUCU------------UCugCU------AGCACUGCUGCuG- -5'
15856 3' -51.6 NC_004065.1 + 166136 0.68 0.990031
Target:  5'- uCGGCAG-AGACG-UCGgcgcCGGCGGCa -3'
miRNA:   3'- -GUCGUCuUCUGCuAGCacu-GCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 59759 0.68 0.98869
Target:  5'- -cGCGu-GGcCGAUgGUGGCGGCGGCg -3'
miRNA:   3'- guCGUcuUCuGCUAgCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 64202 0.68 0.98869
Target:  5'- aGGCGGcGGGCGGaggcaGUGuCGGCGGCg -3'
miRNA:   3'- gUCGUCuUCUGCUag---CACuGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 157951 0.68 0.98869
Target:  5'- -cGCAGGGuGGCGuccaccggcuggGUCGUGAUGGCGuACa -3'
miRNA:   3'- guCGUCUU-CUGC------------UAGCACUGCUGC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.