miRNA display CGI


Results 81 - 100 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15856 3' -51.6 NC_004065.1 + 78420 0.68 0.988549
Target:  5'- gCAGCAugugucgGAGGAUGAcgccgcacUCGUcGAUGACGAUg -3'
miRNA:   3'- -GUCGU-------CUUCUGCU--------AGCA-CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 180079 0.68 0.988262
Target:  5'- gGGCAGAugucauccGGACGGUCGcggUucgguagagcucaaGACGACGAUg -3'
miRNA:   3'- gUCGUCU--------UCUGCUAGC---A--------------CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 7160 0.68 0.987214
Target:  5'- aCGGCAGAAGA-GAUCGaacaUGAUcGCGAUc -3'
miRNA:   3'- -GUCGUCUUCUgCUAGC----ACUGcUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 76737 0.68 0.987214
Target:  5'- uCGGCGG-GGACGggCGcGGCGcCGGCg -3'
miRNA:   3'- -GUCGUCuUCUGCuaGCaCUGCuGCUG- -5'
15856 3' -51.6 NC_004065.1 + 227877 0.68 0.987214
Target:  5'- aCGGgGGGAGACGG-CG-GACGAgGAUc -3'
miRNA:   3'- -GUCgUCUUCUGCUaGCaCUGCUgCUG- -5'
15856 3' -51.6 NC_004065.1 + 100363 0.68 0.987214
Target:  5'- -cGCGGAAGAUGAgcCG-GuCGACGGCc -3'
miRNA:   3'- guCGUCUUCUGCUa-GCaCuGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 131140 0.68 0.987214
Target:  5'- -cGC-GucGACGAgcgCGUgGGCGACGACg -3'
miRNA:   3'- guCGuCuuCUGCUa--GCA-CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 88987 0.68 0.987214
Target:  5'- -uGUAGAGGuccCGAUCGaaacUGGCGaACGACa -3'
miRNA:   3'- guCGUCUUCu--GCUAGC----ACUGC-UGCUG- -5'
15856 3' -51.6 NC_004065.1 + 76985 0.68 0.987214
Target:  5'- gGGCGGGAGACGAUgcUGGaggaggaggaGGCGGCg -3'
miRNA:   3'- gUCGUCUUCUGCUAgcACUg---------CUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 41837 0.68 0.985593
Target:  5'- uCAGCGuGcAGGAUGAcgUGUGACGAUGAa -3'
miRNA:   3'- -GUCGU-C-UUCUGCUa-GCACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 156326 0.68 0.985593
Target:  5'- gCGGCGGAGGAgGAggaa-GCGGCGGCa -3'
miRNA:   3'- -GUCGUCUUCUgCUagcacUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 30056 0.68 0.985593
Target:  5'- aCAGCGGcAG-CGuuAUCGuUGAUGGCGGCg -3'
miRNA:   3'- -GUCGUCuUCuGC--UAGC-ACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 188672 0.68 0.985593
Target:  5'- gCGGCGGGAGACGAcggUCGUcaGGCcgaacuGAUGGCc -3'
miRNA:   3'- -GUCGUCUUCUGCU---AGCA--CUG------CUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 168239 0.68 0.985593
Target:  5'- uGGUAGAuGACGAUgaUGAUGAUGAUg -3'
miRNA:   3'- gUCGUCUuCUGCUAgcACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 80149 0.68 0.985593
Target:  5'- gCGGCAG-AGGCGG-C-UGACGACGGg -3'
miRNA:   3'- -GUCGUCuUCUGCUaGcACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 41742 0.68 0.985593
Target:  5'- uCGGCGGGccGAUGAacuUCGUGGugcUGACGACg -3'
miRNA:   3'- -GUCGUCUu-CUGCU---AGCACU---GCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 111404 0.68 0.985593
Target:  5'- aGGaAGAAGACGAggagGACGACGAg -3'
miRNA:   3'- gUCgUCUUCUGCUagcaCUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 168003 0.68 0.985593
Target:  5'- gCAGCAGcgauGGCGAcCGggggaGACGACGAa -3'
miRNA:   3'- -GUCGUCuu--CUGCUaGCa----CUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 102522 0.68 0.985078
Target:  5'- gCGGCAGAGGACGAcgcgcgccuuguccUCGUcGGUGGCGcCg -3'
miRNA:   3'- -GUCGUCUUCUGCU--------------AGCA-CUGCUGCuG- -5'
15856 3' -51.6 NC_004065.1 + 171792 0.68 0.98382
Target:  5'- uCAGCgAGGAGcCcuUCGUGcGCGGCGACg -3'
miRNA:   3'- -GUCG-UCUUCuGcuAGCAC-UGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.