miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15856 3' -51.6 NC_004065.1 + 3568 0.74 0.865204
Target:  5'- uGGCAGAAGGCGAgcccggucUCGaucGGCGAgGACu -3'
miRNA:   3'- gUCGUCUUCUGCU--------AGCa--CUGCUgCUG- -5'
15856 3' -51.6 NC_004065.1 + 7160 0.68 0.987214
Target:  5'- aCGGCAGAAGA-GAUCGaacaUGAUcGCGAUc -3'
miRNA:   3'- -GUCGUCUUCUgCUAGC----ACUGcUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 8749 0.66 0.996289
Target:  5'- ----cGGAGGCcGUgGUGGCGGCGGCa -3'
miRNA:   3'- gucguCUUCUGcUAgCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 10890 0.7 0.959739
Target:  5'- -cGCAGGAG-CGAcCaUGugGACGACg -3'
miRNA:   3'- guCGUCUUCuGCUaGcACugCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 12942 0.72 0.923671
Target:  5'- -cGC-GAAGGCcagCGUGACGGCGGCu -3'
miRNA:   3'- guCGuCUUCUGcuaGCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 19045 0.7 0.956038
Target:  5'- aCGGCGGcGGugGcccacAUCuGUGACGACGAg -3'
miRNA:   3'- -GUCGUCuUCugC-----UAG-CACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 19119 0.68 0.990158
Target:  5'- cCGGCcacGAGACGGUcCGgaagaagaugccgagGACGACGACg -3'
miRNA:   3'- -GUCGuc-UUCUGCUA-GCa--------------CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 19753 0.69 0.979784
Target:  5'- aAGaCGGggGcguGCGGggGUGugGGCGACg -3'
miRNA:   3'- gUC-GUCuuC---UGCUagCACugCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 23362 0.66 0.997718
Target:  5'- gUAGCGGAAcccuGCGGUCccGACGAUGAa -3'
miRNA:   3'- -GUCGUCUUc---UGCUAGcaCUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 23615 0.66 0.998077
Target:  5'- aGGCGGGcAGGCGggUG-GACgGGCGGCu -3'
miRNA:   3'- gUCGUCU-UCUGCuaGCaCUG-CUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 24832 0.66 0.997304
Target:  5'- -uGguGGAGACGcacgCGgcgcccgauguUGGCGGCGACg -3'
miRNA:   3'- guCguCUUCUGCua--GC-----------ACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 29301 0.69 0.979784
Target:  5'- -cGCGGAAGACGGgguccaaguaaCGUccGAUGACGGCc -3'
miRNA:   3'- guCGUCUUCUGCUa----------GCA--CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 29948 0.66 0.998077
Target:  5'- gAGgAGGAGACuuuUCGgggaccggugcUGGCGGCGGCg -3'
miRNA:   3'- gUCgUCUUCUGcu-AGC-----------ACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 30056 0.68 0.985593
Target:  5'- aCAGCGGcAG-CGuuAUCGuUGAUGGCGGCg -3'
miRNA:   3'- -GUCGUCuUCuGC--UAGC-ACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 30776 0.68 0.98382
Target:  5'- uCGGCGGAcgcGGACGccgaCGaUGACGACuGACg -3'
miRNA:   3'- -GUCGUCU---UCUGCua--GC-ACUGCUG-CUG- -5'
15856 3' -51.6 NC_004065.1 + 33704 0.66 0.996231
Target:  5'- aCAGCAGcGAGAUGG-CGUacuguauGGCGACGGu -3'
miRNA:   3'- -GUCGUC-UUCUGCUaGCA-------CUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 36161 0.67 0.993319
Target:  5'- uCGGCGGGAGucgccGCGGaCGaaGCGACGGCa -3'
miRNA:   3'- -GUCGUCUUC-----UGCUaGCacUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 37333 0.67 0.994197
Target:  5'- aCGGCAGcauaACGAUCGaGGCGAagaCGACa -3'
miRNA:   3'- -GUCGUCuuc-UGCUAGCaCUGCU---GCUG- -5'
15856 3' -51.6 NC_004065.1 + 38424 0.69 0.975044
Target:  5'- -cGCGGGAGAgGG-CGUcuACGACGACg -3'
miRNA:   3'- guCGUCUUCUgCUaGCAc-UGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 38448 0.7 0.966485
Target:  5'- gCGGCAGGAGGCucAUCGgcacacugGugGugGGCa -3'
miRNA:   3'- -GUCGUCUUCUGc-UAGCa-------CugCugCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.