miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15856 3' -51.6 NC_004065.1 + 40734 0.8 0.551501
Target:  5'- gCGGCAGAgguagacgAGACGAUUGUGcACGAgGACg -3'
miRNA:   3'- -GUCGUCU--------UCUGCUAGCAC-UGCUgCUG- -5'
15856 3' -51.6 NC_004065.1 + 40976 0.66 0.997304
Target:  5'- --cCAGAAGAuCGAgacggCGUGguugaACGACGACu -3'
miRNA:   3'- gucGUCUUCU-GCUa----GCAC-----UGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 41742 0.68 0.985593
Target:  5'- uCGGCGGGccGAUGAacuUCGUGGugcUGACGACg -3'
miRNA:   3'- -GUCGUCUu-CUGCU---AGCACU---GCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 41837 0.68 0.985593
Target:  5'- uCAGCGuGcAGGAUGAcgUGUGACGAUGAa -3'
miRNA:   3'- -GUCGU-C-UUCUGCUa-GCACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 43147 0.66 0.997718
Target:  5'- -cGCGGAAGACacgCGcacgGACGGCGGg -3'
miRNA:   3'- guCGUCUUCUGcuaGCa---CUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 43274 0.73 0.872597
Target:  5'- aAGgGGggGAUGuccggCGUGGCGACGAa -3'
miRNA:   3'- gUCgUCuuCUGCua---GCACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 44653 0.7 0.96954
Target:  5'- -cGCuucGAAGACGAcggcgUCGUcGGCGACGAa -3'
miRNA:   3'- guCGu--CUUCUGCU-----AGCA-CUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 46902 0.67 0.993319
Target:  5'- aCGGCuGGAGggggccGCGAUgGgucacGACGACGACc -3'
miRNA:   3'- -GUCGuCUUC------UGCUAgCa----CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 48094 0.67 0.992337
Target:  5'- -cGCGGAccuguGGCGGcggCgGUGGCGGCGGCg -3'
miRNA:   3'- guCGUCUu----CUGCUa--G-CACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 52836 0.66 0.998043
Target:  5'- cCGGUAGggGAgagccgaCGAUCcUGuCGACGAg -3'
miRNA:   3'- -GUCGUCuuCU-------GCUAGcACuGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 53873 0.66 0.997304
Target:  5'- uCAGCAGAcGGACGcuccUCGUccgaaGAaggaGACGACg -3'
miRNA:   3'- -GUCGUCU-UCUGCu---AGCA-----CUg---CUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 55783 0.7 0.956038
Target:  5'- uCGGCGccGAgcAGGCGAUCGcGGCuGACGACc -3'
miRNA:   3'- -GUCGU--CU--UCUGCUAGCaCUG-CUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 56102 0.73 0.872597
Target:  5'- gCAGCAGAcguGACcGUCccgGACGACGGCg -3'
miRNA:   3'- -GUCGUCUu--CUGcUAGca-CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 57373 0.66 0.997867
Target:  5'- gAGCGacaguuuccuucuccGGAGcucGCGGUCGUcACGGCGGCa -3'
miRNA:   3'- gUCGU---------------CUUC---UGCUAGCAcUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 57449 0.66 0.996289
Target:  5'- -cGCuucuucGACGccGUCGUGGCGAUGGCg -3'
miRNA:   3'- guCGucuu--CUGC--UAGCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 58580 0.68 0.990031
Target:  5'- cCAGCGGAuGA-GcUCGccGACGACGGCg -3'
miRNA:   3'- -GUCGUCUuCUgCuAGCa-CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 59157 0.67 0.995675
Target:  5'- aCGGCgAGAGucCGAUCG-GGCGcGCGGCg -3'
miRNA:   3'- -GUCG-UCUUcuGCUAGCaCUGC-UGCUG- -5'
15856 3' -51.6 NC_004065.1 + 59759 0.68 0.98869
Target:  5'- -cGCGu-GGcCGAUgGUGGCGGCGGCg -3'
miRNA:   3'- guCGUcuUCuGCUAgCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 61234 0.66 0.998043
Target:  5'- gAGCAGAGGGCGGagaggaaggCGUcgaaggccugcgcGGCGuCGACg -3'
miRNA:   3'- gUCGUCUUCUGCUa--------GCA-------------CUGCuGCUG- -5'
15856 3' -51.6 NC_004065.1 + 61636 0.66 0.997718
Target:  5'- uCGGUcuGGAugAGACGGUUGgcgcuggaGACGAUGGCg -3'
miRNA:   3'- -GUCG--UCU--UCUGCUAGCa-------CUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.