miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15856 3' -51.6 NC_004065.1 + 62063 0.7 0.959739
Target:  5'- gCGGCAGguGAgGAuUCGgauucaggGGCGACGGCa -3'
miRNA:   3'- -GUCGUCuuCUgCU-AGCa-------CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 62328 0.66 0.997718
Target:  5'- gCAGCAGA--GC--UCGgaGACGGCGACg -3'
miRNA:   3'- -GUCGUCUucUGcuAGCa-CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 62369 0.67 0.993319
Target:  5'- aCGGCGGuggcGGCGGggGUGGUGGCGGCg -3'
miRNA:   3'- -GUCGUCuu--CUGCUagCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 63069 0.7 0.966485
Target:  5'- -cGCAGGAGucgcCGGUCGccGGCGAgCGACg -3'
miRNA:   3'- guCGUCUUCu---GCUAGCa-CUGCU-GCUG- -5'
15856 3' -51.6 NC_004065.1 + 64202 0.68 0.98869
Target:  5'- aGGCGGcGGGCGGaggcaGUGuCGGCGGCg -3'
miRNA:   3'- gUCGUCuUCUGCUag---CACuGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 64533 0.69 0.975044
Target:  5'- gCAGCAGcu-GCGG-CGcGACGGCGACa -3'
miRNA:   3'- -GUCGUCuucUGCUaGCaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 65044 0.67 0.993319
Target:  5'- uCGGCAGAAGAccCGAgCGaGACGA-GGCg -3'
miRNA:   3'- -GUCGUCUUCU--GCUaGCaCUGCUgCUG- -5'
15856 3' -51.6 NC_004065.1 + 65343 0.68 0.990531
Target:  5'- gCAGCAGcugcGGGugGGUCGgucggaucgaccugGGCGACGcGCg -3'
miRNA:   3'- -GUCGUC----UUCugCUAGCa-------------CUGCUGC-UG- -5'
15856 3' -51.6 NC_004065.1 + 65809 0.74 0.841798
Target:  5'- -cGCGGAucgAGGCGAUCGUGAacGCGAUg -3'
miRNA:   3'- guCGUCU---UCUGCUAGCACUgcUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 66259 0.7 0.96322
Target:  5'- gGGCAaGAAcGA-GAUCGUGACGAUGGu -3'
miRNA:   3'- gUCGU-CUU-CUgCUAGCACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 67461 0.69 0.975044
Target:  5'- uCGGCcgAGgcGGCGGUguaCGUGuGCGACGACu -3'
miRNA:   3'- -GUCG--UCuuCUGCUA---GCAC-UGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 67748 0.67 0.994197
Target:  5'- gAGCGGcgccgcguccGACGG-CGUGACGaACGGCg -3'
miRNA:   3'- gUCGUCuu--------CUGCUaGCACUGC-UGCUG- -5'
15856 3' -51.6 NC_004065.1 + 68543 0.67 0.992337
Target:  5'- aGGCGGc-GGCGGagGUGACGGCGuCc -3'
miRNA:   3'- gUCGUCuuCUGCUagCACUGCUGCuG- -5'
15856 3' -51.6 NC_004065.1 + 69568 0.71 0.941753
Target:  5'- aAGCugcuGAAGACGAgcugggguaagccCGUGGCGACGGu -3'
miRNA:   3'- gUCGu---CUUCUGCUa------------GCACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 71564 0.73 0.899976
Target:  5'- ---gGGGAGAgGcgCGUGAUGACGGCa -3'
miRNA:   3'- gucgUCUUCUgCuaGCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 71728 0.73 0.879775
Target:  5'- cCAGCAGAAuGCGAcgGUGACG-CGGCg -3'
miRNA:   3'- -GUCGUCUUcUGCUagCACUGCuGCUG- -5'
15856 3' -51.6 NC_004065.1 + 72116 0.66 0.99683
Target:  5'- uGGacaGGAGGACGGUgGacGCGGCGAUg -3'
miRNA:   3'- gUCg--UCUUCUGCUAgCacUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 75102 0.67 0.993682
Target:  5'- aGGCAGGAGACGuugcgCGaGACGcgcuccaugcagcgcACGGCg -3'
miRNA:   3'- gUCGUCUUCUGCua---GCaCUGC---------------UGCUG- -5'
15856 3' -51.6 NC_004065.1 + 75456 0.76 0.752654
Target:  5'- cCAGUAGAggagccagagcaGGACGAgggCGaUGGCGGCGGCg -3'
miRNA:   3'- -GUCGUCU------------UCUGCUa--GC-ACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 75571 0.66 0.99683
Target:  5'- uCGGCGGccguGACGuUCGUGuCGcCGGCg -3'
miRNA:   3'- -GUCGUCuu--CUGCuAGCACuGCuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.