miRNA display CGI


Results 61 - 80 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15856 3' -51.6 NC_004065.1 + 75777 0.73 0.886734
Target:  5'- aGGCGGAGGcgGCGGUCGgcgaggggGAgCGGCGGCg -3'
miRNA:   3'- gUCGUCUUC--UGCUAGCa-------CU-GCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 76737 0.68 0.987214
Target:  5'- uCGGCGG-GGACGggCGcGGCGcCGGCg -3'
miRNA:   3'- -GUCGUCuUCUGCuaGCaCUGCuGCUG- -5'
15856 3' -51.6 NC_004065.1 + 76985 0.68 0.987214
Target:  5'- gGGCGGGAGACGAUgcUGGaggaggaggaGGCGGCg -3'
miRNA:   3'- gUCGUCUUCUGCUAgcACUg---------CUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 78420 0.68 0.988549
Target:  5'- gCAGCAugugucgGAGGAUGAcgccgcacUCGUcGAUGACGAUg -3'
miRNA:   3'- -GUCGU-------CUUCUGCU--------AGCA-CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 78447 0.67 0.993319
Target:  5'- aGGCucGAcGACGGUCGagGAUGAUGAUg -3'
miRNA:   3'- gUCGu-CUuCUGCUAGCa-CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 78628 0.69 0.975044
Target:  5'- gAGguGAAcGCGGUCGgcGAgGGCGACg -3'
miRNA:   3'- gUCguCUUcUGCUAGCa-CUgCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 79344 0.7 0.956038
Target:  5'- -cGCGGAGGACGAggGcGGCG-CGGCg -3'
miRNA:   3'- guCGUCUUCUGCUagCaCUGCuGCUG- -5'
15856 3' -51.6 NC_004065.1 + 79542 0.73 0.893469
Target:  5'- gCGGgAGAAGGCGGUCGaugcGGCGcaGCGGCg -3'
miRNA:   3'- -GUCgUCUUCUGCUAGCa---CUGC--UGCUG- -5'
15856 3' -51.6 NC_004065.1 + 79814 0.71 0.943573
Target:  5'- cCGGgGGAAGACGGgcaugagcgugUUGUGACGGCcuuGACg -3'
miRNA:   3'- -GUCgUCUUCUGCU-----------AGCACUGCUG---CUG- -5'
15856 3' -51.6 NC_004065.1 + 80149 0.68 0.985593
Target:  5'- gCGGCAG-AGGCGG-C-UGACGACGGg -3'
miRNA:   3'- -GUCGUCuUCUGCUaGcACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 80787 0.75 0.816687
Target:  5'- gAGCAGgcGACGG-CGgcGGCGGCGGCg -3'
miRNA:   3'- gUCGUCuuCUGCUaGCa-CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 80941 1.09 0.012393
Target:  5'- cCAGCAGAAGACGAUCGUGACGACGACc -3'
miRNA:   3'- -GUCGUCUUCUGCUAGCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 83110 0.72 0.906252
Target:  5'- gCGGCGGAAGAUGcgCGgggagcUGugGGCGAg -3'
miRNA:   3'- -GUCGUCUUCUGCuaGC------ACugCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 84897 0.72 0.912294
Target:  5'- -cGUAGggGguguuggaccuaGCuuUCGUGACGACGACg -3'
miRNA:   3'- guCGUCuuC------------UGcuAGCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 86795 0.66 0.997718
Target:  5'- uUAGC-GAAGACGggCGcGGCGaacGCGGCc -3'
miRNA:   3'- -GUCGuCUUCUGCuaGCaCUGC---UGCUG- -5'
15856 3' -51.6 NC_004065.1 + 88727 0.67 0.994521
Target:  5'- gAGCGGcGGAUGAgcacguccaccagcuUgGUGGCGAUGAUg -3'
miRNA:   3'- gUCGUCuUCUGCU---------------AgCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 88987 0.68 0.987214
Target:  5'- -uGUAGAGGuccCGAUCGaaacUGGCGaACGACa -3'
miRNA:   3'- guCGUCUUCu--GCUAGC----ACUGC-UGCUG- -5'
15856 3' -51.6 NC_004065.1 + 89964 0.67 0.995675
Target:  5'- aCGGCuuucuGGGAGcCGGagG-GACGACGACg -3'
miRNA:   3'- -GUCG-----UCUUCuGCUagCaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 92516 0.69 0.977506
Target:  5'- aAGCAGAAGgccACGGuguuccUCGUGcccCGGCGGCa -3'
miRNA:   3'- gUCGUCUUC---UGCU------AGCACu--GCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 96698 0.67 0.994197
Target:  5'- gGGCgAGggGACGAa---GACGGCGAUu -3'
miRNA:   3'- gUCG-UCuuCUGCUagcaCUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.