miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15856 3' -51.6 NC_004065.1 + 227877 0.68 0.987214
Target:  5'- aCGGgGGGAGACGG-CG-GACGAgGAUc -3'
miRNA:   3'- -GUCgUCUUCUGCUaGCaCUGCUgCUG- -5'
15856 3' -51.6 NC_004065.1 + 223868 0.67 0.99498
Target:  5'- gAGUAGcGAGGCGAUCacggaGAUGACGAg -3'
miRNA:   3'- gUCGUC-UUCUGCUAGca---CUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 222292 0.79 0.591804
Target:  5'- aGGUAGAuguacacGACGAUCGUGACGAUGGu -3'
miRNA:   3'- gUCGUCUu------CUGCUAGCACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 217189 0.71 0.943573
Target:  5'- gAGguGGuuGGGCGAUCGUuaGGCG-CGACa -3'
miRNA:   3'- gUCguCU--UCUGCUAGCA--CUGCuGCUG- -5'
15856 3' -51.6 NC_004065.1 + 217118 0.69 0.977506
Target:  5'- cCAGCAGGAGcCcuAUCGUcagGACGAUGAUa -3'
miRNA:   3'- -GUCGUCUUCuGc-UAGCA---CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 216873 0.67 0.995675
Target:  5'- cCGGUuu--GACGGUCGUucGCGGCGGCg -3'
miRNA:   3'- -GUCGucuuCUGCUAGCAc-UGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 212065 0.77 0.683452
Target:  5'- gCGGCAGAcGGACGAcCGUcACGGCGACc -3'
miRNA:   3'- -GUCGUCU-UCUGCUaGCAcUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 211516 0.72 0.929002
Target:  5'- uCGGCucuGAGGGuCG-UCgGUGGCGACGACg -3'
miRNA:   3'- -GUCGu--CUUCU-GCuAG-CACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 211325 0.66 0.997718
Target:  5'- aCAGCGGcaccuucGACGAcUCG-GugGugGGCg -3'
miRNA:   3'- -GUCGUCuu-----CUGCU-AGCaCugCugCUG- -5'
15856 3' -51.6 NC_004065.1 + 209700 0.79 0.601969
Target:  5'- uGGUAGggGAUGggUGUGGCGAUGAUa -3'
miRNA:   3'- gUCGUCuuCUGCuaGCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 207231 0.73 0.893469
Target:  5'- aUAGCgacGGuGGcCGGUCGUGAgGACGACg -3'
miRNA:   3'- -GUCG---UCuUCuGCUAGCACUgCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 205431 0.73 0.872597
Target:  5'- cCGGCGGc-GGCGGUgGcGGCGACGACa -3'
miRNA:   3'- -GUCGUCuuCUGCUAgCaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 202604 0.69 0.97239
Target:  5'- gGGCAGAGGcuggguGCGAUgaggaGUcGACGACGAUg -3'
miRNA:   3'- gUCGUCUUC------UGCUAg----CA-CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 202604 0.67 0.994197
Target:  5'- -cGCGGGcGGAC-AUCGUGACGGCa-- -3'
miRNA:   3'- guCGUCU-UCUGcUAGCACUGCUGcug -5'
15856 3' -51.6 NC_004065.1 + 202245 0.73 0.872597
Target:  5'- gGGCAGGAGGCccUCcaGACGGCGGCg -3'
miRNA:   3'- gUCGUCUUCUGcuAGcaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 201315 0.69 0.981887
Target:  5'- gAGgAGAGGAUGAUgGUGGCGGgGuGCu -3'
miRNA:   3'- gUCgUCUUCUGCUAgCACUGCUgC-UG- -5'
15856 3' -51.6 NC_004065.1 + 198775 0.66 0.99683
Target:  5'- -cGCAG-AGACGAUCG-GAC-ACGGu -3'
miRNA:   3'- guCGUCuUCUGCUAGCaCUGcUGCUg -5'
15856 3' -51.6 NC_004065.1 + 197535 0.68 0.98382
Target:  5'- gCGGUAGAaggGGACGAUCGUaucgcaGAaaaacugccguCGGCGGCa -3'
miRNA:   3'- -GUCGUCU---UCUGCUAGCA------CU-----------GCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 197212 0.68 0.990031
Target:  5'- gAGCGGcccGACGGcuaCGagGACGACGACa -3'
miRNA:   3'- gUCGUCuu-CUGCUa--GCa-CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 197010 0.69 0.979784
Target:  5'- -uGCGGAuGACGAUCc-GAcCGACGACc -3'
miRNA:   3'- guCGUCUuCUGCUAGcaCU-GCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.