miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15856 3' -51.6 NC_004065.1 + 193611 0.71 0.938953
Target:  5'- aCAGCgucuagugaAGAGGAUGAaagcgaaaGUGGCGGCGGCa -3'
miRNA:   3'- -GUCG---------UCUUCUGCUag------CACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 189641 0.7 0.966485
Target:  5'- aCGGCGGAGGAccCGGagGacaUGACGACGAg -3'
miRNA:   3'- -GUCGUCUUCU--GCUagC---ACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 188672 0.68 0.985593
Target:  5'- gCGGCGGGAGACGAcggUCGUcaGGCcgaacuGAUGGCc -3'
miRNA:   3'- -GUCGUCUUCUGCU---AGCA--CUG------CUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 187234 0.71 0.947958
Target:  5'- aAGgAGAAGAgGAUgaCGaaggGACGACGACg -3'
miRNA:   3'- gUCgUCUUCUgCUA--GCa---CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 186714 0.67 0.995407
Target:  5'- gGGcCAGAuGACGAcgucguuuuugucgUCGUcuggucgcgggucGACGACGACg -3'
miRNA:   3'- gUC-GUCUuCUGCU--------------AGCA-------------CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 186572 0.69 0.977506
Target:  5'- gCGGCGGAuGAUGuggcUGcGACGACGACg -3'
miRNA:   3'- -GUCGUCUuCUGCua--GCaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 186170 0.72 0.918101
Target:  5'- -uGCAGAAGAUGAaCGaguUGGCGAuCGACu -3'
miRNA:   3'- guCGUCUUCUGCUaGC---ACUGCU-GCUG- -5'
15856 3' -51.6 NC_004065.1 + 185439 0.69 0.97239
Target:  5'- gGGaggaGGAGGACGAggaGUGAUGAUGAa -3'
miRNA:   3'- gUCg---UCUUCUGCUag-CACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 184795 0.68 0.983257
Target:  5'- gGGCGGAGGAgGAcgGUGACGcaacgguggcggugGCGGCa -3'
miRNA:   3'- gUCGUCUUCUgCUagCACUGC--------------UGCUG- -5'
15856 3' -51.6 NC_004065.1 + 182348 0.76 0.762191
Target:  5'- uCGGUGGAcGACGAUUccGACGACGACu -3'
miRNA:   3'- -GUCGUCUuCUGCUAGcaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 181117 0.66 0.998077
Target:  5'- -uGCAu--GACGGg-GUGGCGGCGGCg -3'
miRNA:   3'- guCGUcuuCUGCUagCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 180079 0.68 0.988262
Target:  5'- gGGCAGAugucauccGGACGGUCGcggUucgguagagcucaaGACGACGAUg -3'
miRNA:   3'- gUCGUCU--------UCUGCUAGC---A--------------CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 176326 0.81 0.502392
Target:  5'- gGGaGGAGGGCGGUCG-GGCGGCGACa -3'
miRNA:   3'- gUCgUCUUCUGCUAGCaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 176172 0.69 0.979784
Target:  5'- -uGCuG-AGACGAUgGcGACGGCGGCg -3'
miRNA:   3'- guCGuCuUCUGCUAgCaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 175905 0.73 0.893469
Target:  5'- uGGgAGAcGAUGAUCGUcgcGGCGAUGACg -3'
miRNA:   3'- gUCgUCUuCUGCUAGCA---CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 173970 0.67 0.995675
Target:  5'- -cGCcaacgcGAUGAUCGcGACGGCGACg -3'
miRNA:   3'- guCGucuu--CUGCUAGCaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 173403 0.71 0.947958
Target:  5'- gCAGUAGAGGAUGAUguUGAUGAUGGg -3'
miRNA:   3'- -GUCGUCUUCUGCUAgcACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 171978 0.77 0.713543
Target:  5'- gCGGCGGAGGGguCG-UCGUGAaCGACGACc -3'
miRNA:   3'- -GUCGUCUUCU--GCuAGCACU-GCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 171951 0.71 0.938953
Target:  5'- -cGCGcAAGGCGggCgGUGGCGGCGGCg -3'
miRNA:   3'- guCGUcUUCUGCuaG-CACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 171792 0.68 0.98382
Target:  5'- uCAGCgAGGAGcCcuUCGUGcGCGGCGACg -3'
miRNA:   3'- -GUCG-UCUUCuGcuAGCAC-UGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.