miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15856 3' -51.6 NC_004065.1 + 168547 0.67 0.993319
Target:  5'- gCGGCGGuGGugGcagCGgcggcGGCGGCGACa -3'
miRNA:   3'- -GUCGUCuUCugCua-GCa----CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 168239 0.68 0.985593
Target:  5'- uGGUAGAuGACGAUgaUGAUGAUGAUg -3'
miRNA:   3'- gUCGUCUuCUGCUAgcACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 168003 0.68 0.985593
Target:  5'- gCAGCAGcgauGGCGAcCGggggaGACGACGAa -3'
miRNA:   3'- -GUCGUCuu--CUGCUaGCa----CUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 166136 0.68 0.990031
Target:  5'- uCGGCAG-AGACG-UCGgcgcCGGCGGCa -3'
miRNA:   3'- -GUCGUCuUCUGCuAGCacu-GCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 165455 0.7 0.956038
Target:  5'- uGGCAGuGGAUGAUCuUGAUGACcGCg -3'
miRNA:   3'- gUCGUCuUCUGCUAGcACUGCUGcUG- -5'
15856 3' -51.6 NC_004065.1 + 161825 0.66 0.998077
Target:  5'- aCGGaCGGAcGGGCGggCG-GACGGgGACg -3'
miRNA:   3'- -GUC-GUCU-UCUGCuaGCaCUGCUgCUG- -5'
15856 3' -51.6 NC_004065.1 + 157951 0.68 0.98869
Target:  5'- -cGCAGGGuGGCGuccaccggcuggGUCGUGAUGGCGuACa -3'
miRNA:   3'- guCGUCUU-CUGC------------UAGCACUGCUGC-UG- -5'
15856 3' -51.6 NC_004065.1 + 156326 0.68 0.985593
Target:  5'- gCGGCGGAGGAgGAggaa-GCGGCGGCa -3'
miRNA:   3'- -GUCGUCUUCUgCUagcacUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 156277 0.67 0.993319
Target:  5'- gCGGCcucGGGAGGCGGgaGUaGCGGCGGCa -3'
miRNA:   3'- -GUCG---UCUUCUGCUagCAcUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 154112 0.7 0.961157
Target:  5'- gCAGCAugggGAucguguguccacaugGGACGAUCGccccgggcggUGGCGGCGGCg -3'
miRNA:   3'- -GUCGU----CU---------------UCUGCUAGC----------ACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 153617 0.66 0.997718
Target:  5'- uCGGCucGGgcGGCGccacUCG-GACGGCGGCg -3'
miRNA:   3'- -GUCG--UCuuCUGCu---AGCaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 153255 0.66 0.99683
Target:  5'- -cGCGGc-GGCGAUgCGccgGACGAUGACg -3'
miRNA:   3'- guCGUCuuCUGCUA-GCa--CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 152305 0.67 0.994197
Target:  5'- gCGGCGGc-GGCGGUgcCGgcgggGACGAUGACg -3'
miRNA:   3'- -GUCGUCuuCUGCUA--GCa----CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 151425 0.7 0.966485
Target:  5'- gCGGCGcGAcGACGucgCGUucGACGGCGACg -3'
miRNA:   3'- -GUCGU-CUuCUGCua-GCA--CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 151404 0.68 0.990031
Target:  5'- uGGCGGAGGcggguCGGUCGggGugGuCGACc -3'
miRNA:   3'- gUCGUCUUCu----GCUAGCa-CugCuGCUG- -5'
15856 3' -51.6 NC_004065.1 + 149934 0.72 0.906252
Target:  5'- uCGGCAGGAGGCGggCuUGAUccacaGACGGCg -3'
miRNA:   3'- -GUCGUCUUCUGCuaGcACUG-----CUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 149047 0.69 0.97239
Target:  5'- gAGCGGgcGACGAc---GGCGGCGGCa -3'
miRNA:   3'- gUCGUCuuCUGCUagcaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 148876 0.7 0.969243
Target:  5'- gCGGCGGggGGCGAgggggacgaaaccUCG-GAgGGCGAg -3'
miRNA:   3'- -GUCGUCuuCUGCU-------------AGCaCUgCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 147100 0.69 0.979784
Target:  5'- cCGGCGGAGGAcucCGAuuUCGaguacUGACGGcCGACa -3'
miRNA:   3'- -GUCGUCUUCU---GCU--AGC-----ACUGCU-GCUG- -5'
15856 3' -51.6 NC_004065.1 + 146888 0.7 0.956038
Target:  5'- gCGGCAGu-GACGAuUCGgguaaGGCGugGACu -3'
miRNA:   3'- -GUCGUCuuCUGCU-AGCa----CUGCugCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.