miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15856 3' -51.6 NC_004065.1 + 19045 0.7 0.956038
Target:  5'- aCGGCGGcGGugGcccacAUCuGUGACGACGAg -3'
miRNA:   3'- -GUCGUCuUCugC-----UAG-CACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 142009 0.73 0.899976
Target:  5'- gCGGCGGAucgucGACGAcgUCGUcGuCGACGACg -3'
miRNA:   3'- -GUCGUCUu----CUGCU--AGCA-CuGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 149934 0.72 0.906252
Target:  5'- uCGGCAGGAGGCGggCuUGAUccacaGACGGCg -3'
miRNA:   3'- -GUCGUCUUCUGCuaGcACUG-----CUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 84897 0.72 0.912294
Target:  5'- -cGUAGggGguguuggaccuaGCuuUCGUGACGACGACg -3'
miRNA:   3'- guCGUCuuC------------UGcuAGCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 135141 0.72 0.912294
Target:  5'- gCGGCGGGugauGACGAcggggacgUCGaUGACGACGAg -3'
miRNA:   3'- -GUCGUCUu---CUGCU--------AGC-ACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 96748 0.72 0.918101
Target:  5'- gGGC-GAGGGCGAgcagGGCGACGGCg -3'
miRNA:   3'- gUCGuCUUCUGCUagcaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 69568 0.71 0.941753
Target:  5'- aAGCugcuGAAGACGAgcugggguaagccCGUGGCGACGGu -3'
miRNA:   3'- gUCGu---CUUCUGCUa------------GCACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 79814 0.71 0.943573
Target:  5'- cCGGgGGAAGACGGgcaugagcgugUUGUGACGGCcuuGACg -3'
miRNA:   3'- -GUCgUCUUCUGCU-----------AGCACUGCUG---CUG- -5'
15856 3' -51.6 NC_004065.1 + 173403 0.71 0.947958
Target:  5'- gCAGUAGAGGAUGAUguUGAUGAUGGg -3'
miRNA:   3'- -GUCGUCUUCUGCUAgcACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 71564 0.73 0.899976
Target:  5'- ---gGGGAGAgGcgCGUGAUGACGGCa -3'
miRNA:   3'- gucgUCUUCUgCuaGCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 109227 0.73 0.891472
Target:  5'- uCGGCgacGGGAGACGGcggcgguagcggcgUCgGUGACGAUGACg -3'
miRNA:   3'- -GUCG---UCUUCUGCU--------------AG-CACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 75777 0.73 0.886734
Target:  5'- aGGCGGAGGcgGCGGUCGgcgaggggGAgCGGCGGCg -3'
miRNA:   3'- gUCGUCUUC--UGCUAGCa-------CU-GCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 98396 0.79 0.581668
Target:  5'- uGGCgaGGAGGGCGAUgagaGUGGCGGCGGCa -3'
miRNA:   3'- gUCG--UCUUCUGCUAg---CACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 222292 0.79 0.591804
Target:  5'- aGGUAGAuguacacGACGAUCGUGACGAUGGu -3'
miRNA:   3'- gUCGUCUu------CUGCUAGCACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 75456 0.76 0.752654
Target:  5'- cCAGUAGAggagccagagcaGGACGAgggCGaUGGCGGCGGCg -3'
miRNA:   3'- -GUCGUCU------------UCUGCUa--GC-ACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 109109 0.74 0.840987
Target:  5'- gGGCGGAggagaggGGACGGagGUGGCGGgGACg -3'
miRNA:   3'- gUCGUCU-------UCUGCUagCACUGCUgCUG- -5'
15856 3' -51.6 NC_004065.1 + 65809 0.74 0.841798
Target:  5'- -cGCGGAucgAGGCGAUCGUGAacGCGAUg -3'
miRNA:   3'- guCGUCU---UCUGCUAGCACUgcUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 113916 0.74 0.857603
Target:  5'- gGGCGG-AGAuCGcgCGUGuCGACGACg -3'
miRNA:   3'- gUCGUCuUCU-GCuaGCACuGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 56102 0.73 0.872597
Target:  5'- gCAGCAGAcguGACcGUCccgGACGACGGCg -3'
miRNA:   3'- -GUCGUCUu--CUGcUAGca-CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 71728 0.73 0.879775
Target:  5'- cCAGCAGAAuGCGAcgGUGACG-CGGCg -3'
miRNA:   3'- -GUCGUCUUcUGCUagCACUGCuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.