miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15856 3' -51.6 NC_004065.1 + 65809 0.74 0.841798
Target:  5'- -cGCGGAucgAGGCGAUCGUGAacGCGAUg -3'
miRNA:   3'- guCGUCU---UCUGCUAGCACUgcUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 109109 0.74 0.840987
Target:  5'- gGGCGGAggagaggGGACGGagGUGGCGGgGACg -3'
miRNA:   3'- gUCGUCU-------UCUGCUagCACUGCUgCUG- -5'
15856 3' -51.6 NC_004065.1 + 75456 0.76 0.752654
Target:  5'- cCAGUAGAggagccagagcaGGACGAgggCGaUGGCGGCGGCg -3'
miRNA:   3'- -GUCGUCU------------UCUGCUa--GC-ACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 222292 0.79 0.591804
Target:  5'- aGGUAGAuguacacGACGAUCGUGACGAUGGu -3'
miRNA:   3'- gUCGUCUu------CUGCUAGCACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 98396 0.79 0.581668
Target:  5'- uGGCgaGGAGGGCGAUgagaGUGGCGGCGGCa -3'
miRNA:   3'- gUCG--UCUUCUGCUAg---CACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 84897 0.72 0.912294
Target:  5'- -cGUAGggGguguuggaccuaGCuuUCGUGACGACGACg -3'
miRNA:   3'- guCGUCuuC------------UGcuAGCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 135141 0.72 0.912294
Target:  5'- gCGGCGGGugauGACGAcggggacgUCGaUGACGACGAg -3'
miRNA:   3'- -GUCGUCUu---CUGCU--------AGC-ACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 151425 0.7 0.966485
Target:  5'- gCGGCGcGAcGACGucgCGUucGACGGCGACg -3'
miRNA:   3'- -GUCGU-CUuCUGCua-GCA--CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 38448 0.7 0.966485
Target:  5'- gCGGCAGGAGGCucAUCGgcacacugGugGugGGCa -3'
miRNA:   3'- -GUCGUCUUCUGc-UAGCa-------CugCugCUG- -5'
15856 3' -51.6 NC_004065.1 + 139622 0.7 0.96322
Target:  5'- -cGCAGAugcGGAgCGGUggCGUGuCGACGACg -3'
miRNA:   3'- guCGUCU---UCU-GCUA--GCACuGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 66259 0.7 0.96322
Target:  5'- gGGCAaGAAcGA-GAUCGUGACGAUGGu -3'
miRNA:   3'- gUCGU-CUU-CUgCUAGCACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 138547 0.7 0.96322
Target:  5'- gCGGCAcGAGcGGCGG-CGgacUGACGGCGACg -3'
miRNA:   3'- -GUCGU-CUU-CUGCUaGC---ACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 154112 0.7 0.961157
Target:  5'- gCAGCAugggGAucguguguccacaugGGACGAUCGccccgggcggUGGCGGCGGCg -3'
miRNA:   3'- -GUCGU----CU---------------UCUGCUAGC----------ACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 62063 0.7 0.959739
Target:  5'- gCGGCAGguGAgGAuUCGgauucaggGGCGACGGCa -3'
miRNA:   3'- -GUCGUCuuCUgCU-AGCa-------CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 55783 0.7 0.956038
Target:  5'- uCGGCGccGAgcAGGCGAUCGcGGCuGACGACc -3'
miRNA:   3'- -GUCGU--CU--UCUGCUAGCaCUG-CUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 19045 0.7 0.956038
Target:  5'- aCGGCGGcGGugGcccacAUCuGUGACGACGAg -3'
miRNA:   3'- -GUCGUCuUCugC-----UAG-CACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 173403 0.71 0.947958
Target:  5'- gCAGUAGAGGAUGAUguUGAUGAUGGg -3'
miRNA:   3'- -GUCGUCUUCUGCUAgcACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 79814 0.71 0.943573
Target:  5'- cCGGgGGAAGACGGgcaugagcgugUUGUGACGGCcuuGACg -3'
miRNA:   3'- -GUCgUCUUCUGCU-----------AGCACUGCUG---CUG- -5'
15856 3' -51.6 NC_004065.1 + 69568 0.71 0.941753
Target:  5'- aAGCugcuGAAGACGAgcugggguaagccCGUGGCGACGGu -3'
miRNA:   3'- gUCGu---CUUCUGCUa------------GCACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 96748 0.72 0.918101
Target:  5'- gGGC-GAGGGCGAgcagGGCGACGGCg -3'
miRNA:   3'- gUCGuCUUCUGCUagcaCUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.