miRNA display CGI


Results 61 - 80 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15856 3' -51.6 NC_004065.1 + 173403 0.71 0.947958
Target:  5'- gCAGUAGAGGAUGAUguUGAUGAUGGg -3'
miRNA:   3'- -GUCGUCUUCUGCUAgcACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 19045 0.7 0.956038
Target:  5'- aCGGCGGcGGugGcccacAUCuGUGACGACGAg -3'
miRNA:   3'- -GUCGUCuUCugC-----UAG-CACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 149047 0.69 0.97239
Target:  5'- gAGCGGgcGACGAc---GGCGGCGGCa -3'
miRNA:   3'- gUCGUCuuCUGCUagcaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 64533 0.69 0.975044
Target:  5'- gCAGCAGcu-GCGG-CGcGACGGCGACa -3'
miRNA:   3'- -GUCGUCuucUGCUaGCaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 67461 0.69 0.975044
Target:  5'- uCGGCcgAGgcGGCGGUguaCGUGuGCGACGACu -3'
miRNA:   3'- -GUCG--UCuuCUGCUA---GCAC-UGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 107177 0.69 0.979565
Target:  5'- -cGcCAGAGGGCGGUCGaGACGGgagccguCGACu -3'
miRNA:   3'- guC-GUCUUCUGCUAGCaCUGCU-------GCUG- -5'
15856 3' -51.6 NC_004065.1 + 19753 0.69 0.979784
Target:  5'- aAGaCGGggGcguGCGGggGUGugGGCGACg -3'
miRNA:   3'- gUC-GUCuuC---UGCUagCACugCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 176172 0.69 0.979784
Target:  5'- -uGCuG-AGACGAUgGcGACGGCGGCg -3'
miRNA:   3'- guCGuCuUCUGCUAgCaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 197010 0.69 0.979784
Target:  5'- -uGCGGAuGACGAUCc-GAcCGACGACc -3'
miRNA:   3'- guCGUCUuCUGCUAGcaCU-GCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 29301 0.69 0.979784
Target:  5'- -cGCGGAAGACGGgguccaaguaaCGUccGAUGACGGCc -3'
miRNA:   3'- guCGUCUUCUGCUa----------GCA--CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 114736 0.69 0.97239
Target:  5'- gCGGCGGAGcccuccCGAuUCG-GACGACGACg -3'
miRNA:   3'- -GUCGUCUUcu----GCU-AGCaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 44653 0.7 0.96954
Target:  5'- -cGCuucGAAGACGAcggcgUCGUcGGCGACGAa -3'
miRNA:   3'- guCGu--CUUCUGCU-----AGCA-CUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 55783 0.7 0.956038
Target:  5'- uCGGCGccGAgcAGGCGAUCGcGGCuGACGACc -3'
miRNA:   3'- -GUCGU--CU--UCUGCUAGCaCUG-CUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 62063 0.7 0.959739
Target:  5'- gCGGCAGguGAgGAuUCGgauucaggGGCGACGGCa -3'
miRNA:   3'- -GUCGUCuuCUgCU-AGCa-------CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 154112 0.7 0.961157
Target:  5'- gCAGCAugggGAucguguguccacaugGGACGAUCGccccgggcggUGGCGGCGGCg -3'
miRNA:   3'- -GUCGU----CU---------------UCUGCUAGC----------ACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 138547 0.7 0.96322
Target:  5'- gCGGCAcGAGcGGCGG-CGgacUGACGGCGACg -3'
miRNA:   3'- -GUCGU-CUU-CUGCUaGC---ACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 66259 0.7 0.96322
Target:  5'- gGGCAaGAAcGA-GAUCGUGACGAUGGu -3'
miRNA:   3'- gUCGU-CUU-CUgCUAGCACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 139622 0.7 0.96322
Target:  5'- -cGCAGAugcGGAgCGGUggCGUGuCGACGACg -3'
miRNA:   3'- guCGUCU---UCU-GCUA--GCACuGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 38448 0.7 0.966485
Target:  5'- gCGGCAGGAGGCucAUCGgcacacugGugGugGGCa -3'
miRNA:   3'- -GUCGUCUUCUGc-UAGCa-------CugCugCUG- -5'
15856 3' -51.6 NC_004065.1 + 151425 0.7 0.966485
Target:  5'- gCGGCGcGAcGACGucgCGUucGACGGCGACg -3'
miRNA:   3'- -GUCGU-CUuCUGCua-GCA--CUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.