miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15856 3' -51.6 NC_004065.1 + 80941 1.09 0.012393
Target:  5'- cCAGCAGAAGACGAUCGUGACGACGACc -3'
miRNA:   3'- -GUCGUCUUCUGCUAGCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 207231 0.73 0.893469
Target:  5'- aUAGCgacGGuGGcCGGUCGUGAgGACGACg -3'
miRNA:   3'- -GUCG---UCuUCuGCUAGCACUgCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 83110 0.72 0.906252
Target:  5'- gCGGCGGAAGAUGcgCGgggagcUGugGGCGAg -3'
miRNA:   3'- -GUCGUCUUCUGCuaGC------ACugCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 181117 0.66 0.998077
Target:  5'- -uGCAu--GACGGg-GUGGCGGCGGCg -3'
miRNA:   3'- guCGUcuuCUGCUagCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 171978 0.77 0.713543
Target:  5'- gCGGCGGAGGGguCG-UCGUGAaCGACGACc -3'
miRNA:   3'- -GUCGUCUUCU--GCuAGCACU-GCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 182348 0.76 0.762191
Target:  5'- uCGGUGGAcGACGAUUccGACGACGACu -3'
miRNA:   3'- -GUCGUCUuCUGCUAGcaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 105450 0.75 0.807972
Target:  5'- uGGCGacGGACGAgaaCGUGACGGCGAa -3'
miRNA:   3'- gUCGUcuUCUGCUa--GCACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 80787 0.75 0.816687
Target:  5'- gAGCAGgcGACGG-CGgcGGCGGCGGCg -3'
miRNA:   3'- gUCGUCuuCUGCUaGCa-CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 43274 0.73 0.872597
Target:  5'- aAGgGGggGAUGuccggCGUGGCGACGAa -3'
miRNA:   3'- gUCgUCuuCUGCua---GCACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 175905 0.73 0.893469
Target:  5'- uGGgAGAcGAUGAUCGUcgcGGCGAUGACg -3'
miRNA:   3'- gUCgUCUuCUGCUAGCA---CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 205431 0.73 0.872597
Target:  5'- cCGGCGGc-GGCGGUgGcGGCGACGACa -3'
miRNA:   3'- -GUCGUCuuCUGCUAgCaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 3568 0.74 0.865204
Target:  5'- uGGCAGAAGGCGAgcccggucUCGaucGGCGAgGACu -3'
miRNA:   3'- gUCGUCUUCUGCU--------AGCa--CUGCUgCUG- -5'
15856 3' -51.6 NC_004065.1 + 176326 0.81 0.502392
Target:  5'- gGGaGGAGGGCGGUCG-GGCGGCGACa -3'
miRNA:   3'- gUCgUCUUCUGCUAGCaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 133708 0.73 0.879775
Target:  5'- gAGCccuuGGAccccgAGACGGagUCGUGugGACGGCg -3'
miRNA:   3'- gUCG----UCU-----UCUGCU--AGCACugCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 209700 0.79 0.601969
Target:  5'- uGGUAGggGAUGggUGUGGCGAUGAUa -3'
miRNA:   3'- gUCGUCuuCUGCuaGCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 130003 0.75 0.825234
Target:  5'- gCGGCGGAcgAGGCGAUgcUGUacGGCGGCGGCg -3'
miRNA:   3'- -GUCGUCU--UCUGCUA--GCA--CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 79542 0.73 0.893469
Target:  5'- gCGGgAGAAGGCGGUCGaugcGGCGcaGCGGCg -3'
miRNA:   3'- -GUCgUCUUCUGCUAGCa---CUGC--UGCUG- -5'
15856 3' -51.6 NC_004065.1 + 111752 0.73 0.899976
Target:  5'- aAGaGGAGGACGAg---GACGACGACg -3'
miRNA:   3'- gUCgUCUUCUGCUagcaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 212065 0.77 0.683452
Target:  5'- gCGGCAGAcGGACGAcCGUcACGGCGACc -3'
miRNA:   3'- -GUCGUCU-UCUGCUaGCAcUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 111967 0.76 0.771613
Target:  5'- gGGUGGAGGACGAagaCGUGuACGACGAg -3'
miRNA:   3'- gUCGUCUUCUGCUa--GCAC-UGCUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.