Results 21 - 40 of 198 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15856 | 3' | -51.6 | NC_004065.1 | + | 110970 | 0.72 | 0.923671 |
Target: 5'- gCAGCuGAGGACGGgucagagcgUCGUGuuGACGAg -3' miRNA: 3'- -GUCGuCUUCUGCU---------AGCACugCUGCUg -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 83110 | 0.72 | 0.906252 |
Target: 5'- gCGGCGGAAGAUGcgCGgggagcUGugGGCGAg -3' miRNA: 3'- -GUCGUCUUCUGCuaGC------ACugCUGCUg -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 3568 | 0.74 | 0.865204 |
Target: 5'- uGGCAGAAGGCGAgcccggucUCGaucGGCGAgGACu -3' miRNA: 3'- gUCGUCUUCUGCU--------AGCa--CUGCUgCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 212065 | 0.77 | 0.683452 |
Target: 5'- gCGGCAGAcGGACGAcCGUcACGGCGACc -3' miRNA: 3'- -GUCGUCU-UCUGCUaGCAcUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 165455 | 0.7 | 0.956038 |
Target: 5'- uGGCAGuGGAUGAUCuUGAUGACcGCg -3' miRNA: 3'- gUCGUCuUCUGCUAGcACUGCUGcUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 119952 | 0.71 | 0.938953 |
Target: 5'- aGGCAGAGGACGGcCGUGAgCccCGACc -3' miRNA: 3'- gUCGUCUUCUGCUaGCACU-GcuGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 207231 | 0.73 | 0.893469 |
Target: 5'- aUAGCgacGGuGGcCGGUCGUGAgGACGACg -3' miRNA: 3'- -GUCG---UCuUCuGCUAGCACUgCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 209700 | 0.79 | 0.601969 |
Target: 5'- uGGUAGggGAUGggUGUGGCGAUGAUa -3' miRNA: 3'- gUCGUCuuCUGCuaGCACUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 143315 | 0.71 | 0.938953 |
Target: 5'- gGGCAGGAGGgGAagagggggCGggGGCGGCGGCa -3' miRNA: 3'- gUCGUCUUCUgCUa-------GCa-CUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 176326 | 0.81 | 0.502392 |
Target: 5'- gGGaGGAGGGCGGUCG-GGCGGCGACa -3' miRNA: 3'- gUCgUCUUCUGCUAGCaCUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 111752 | 0.73 | 0.899976 |
Target: 5'- aAGaGGAGGACGAg---GACGACGACg -3' miRNA: 3'- gUCgUCUUCUGCUagcaCUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 121283 | 0.72 | 0.923671 |
Target: 5'- gGGCuuGAAGACccgCGUGAgGGCGACg -3' miRNA: 3'- gUCGu-CUUCUGcuaGCACUgCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 133708 | 0.73 | 0.879775 |
Target: 5'- gAGCccuuGGAccccgAGACGGagUCGUGugGACGGCg -3' miRNA: 3'- gUCG----UCU-----UCUGCU--AGCACugCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 43274 | 0.73 | 0.872597 |
Target: 5'- aAGgGGggGAUGuccggCGUGGCGACGAa -3' miRNA: 3'- gUCgUCuuCUGCua---GCACUGCUGCUg -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 105450 | 0.75 | 0.807972 |
Target: 5'- uGGCGacGGACGAgaaCGUGACGGCGAa -3' miRNA: 3'- gUCGUcuUCUGCUa--GCACUGCUGCUg -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 171978 | 0.77 | 0.713543 |
Target: 5'- gCGGCGGAGGGguCG-UCGUGAaCGACGACc -3' miRNA: 3'- -GUCGUCUUCU--GCuAGCACU-GCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 10890 | 0.7 | 0.959739 |
Target: 5'- -cGCAGGAG-CGAcCaUGugGACGACg -3' miRNA: 3'- guCGUCUUCuGCUaGcACugCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 103838 | 0.7 | 0.956038 |
Target: 5'- gAGCAaGGAGaACGc-CGUGACGGCGAUc -3' miRNA: 3'- gUCGU-CUUC-UGCuaGCACUGCUGCUG- -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 119490 | 0.71 | 0.943573 |
Target: 5'- gCAGUGGAAGagaGCGAagUCGUGcGCGGCGAg -3' miRNA: 3'- -GUCGUCUUC---UGCU--AGCAC-UGCUGCUg -5' |
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15856 | 3' | -51.6 | NC_004065.1 | + | 171951 | 0.71 | 0.938953 |
Target: 5'- -cGCGcAAGGCGggCgGUGGCGGCGGCg -3' miRNA: 3'- guCGUcUUCUGCuaG-CACUGCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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