miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15856 3' -51.6 NC_004065.1 + 187234 0.71 0.947958
Target:  5'- aAGgAGAAGAgGAUgaCGaaggGACGACGACg -3'
miRNA:   3'- gUCgUCUUCUgCUA--GCa---CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 207231 0.73 0.893469
Target:  5'- aUAGCgacGGuGGcCGGUCGUGAgGACGACg -3'
miRNA:   3'- -GUCG---UCuUCuGCUAGCACUgCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 209700 0.79 0.601969
Target:  5'- uGGUAGggGAUGggUGUGGCGAUGAUa -3'
miRNA:   3'- gUCGUCuuCUGCuaGCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 217189 0.71 0.943573
Target:  5'- gAGguGGuuGGGCGAUCGUuaGGCG-CGACa -3'
miRNA:   3'- gUCguCU--UCUGCUAGCA--CUGCuGCUG- -5'
15856 3' -51.6 NC_004065.1 + 176326 0.81 0.502392
Target:  5'- gGGaGGAGGGCGGUCG-GGCGGCGACa -3'
miRNA:   3'- gUCgUCUUCUGCUAGCaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 171792 0.68 0.98382
Target:  5'- uCAGCgAGGAGcCcuUCGUGcGCGGCGACg -3'
miRNA:   3'- -GUCG-UCUUCuGcuAGCAC-UGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 171978 0.77 0.713543
Target:  5'- gCGGCGGAGGGguCG-UCGUGAaCGACGACc -3'
miRNA:   3'- -GUCGUCUUCU--GCuAGCACU-GCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 136645 0.69 0.981887
Target:  5'- gAGCGGc-GugGAUCcugGUGGCGAgCGACg -3'
miRNA:   3'- gUCGUCuuCugCUAG---CACUGCU-GCUG- -5'
15856 3' -51.6 NC_004065.1 + 186572 0.69 0.977506
Target:  5'- gCGGCGGAuGAUGuggcUGcGACGACGACg -3'
miRNA:   3'- -GUCGUCUuCUGCua--GCaCUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 38424 0.69 0.975044
Target:  5'- -cGCGGGAGAgGG-CGUcuACGACGACg -3'
miRNA:   3'- guCGUCUUCUgCUaGCAc-UGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 148876 0.7 0.969243
Target:  5'- gCGGCGGggGGCGAgggggacgaaaccUCG-GAgGGCGAg -3'
miRNA:   3'- -GUCGUCuuCUGCU-------------AGCaCUgCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 10890 0.7 0.959739
Target:  5'- -cGCAGGAG-CGAcCaUGugGACGACg -3'
miRNA:   3'- guCGUCUUCuGCUaGcACugCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 103838 0.7 0.956038
Target:  5'- gAGCAaGGAGaACGc-CGUGACGGCGAUc -3'
miRNA:   3'- gUCGU-CUUC-UGCuaGCACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 193611 0.71 0.938953
Target:  5'- aCAGCgucuagugaAGAGGAUGAaagcgaaaGUGGCGGCGGCa -3'
miRNA:   3'- -GUCG---------UCUUCUGCUag------CACUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 143315 0.71 0.938953
Target:  5'- gGGCAGGAGGgGAagagggggCGggGGCGGCGGCa -3'
miRNA:   3'- gUCGUCUUCUgCUa-------GCa-CUGCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 110970 0.72 0.923671
Target:  5'- gCAGCuGAGGACGGgucagagcgUCGUGuuGACGAg -3'
miRNA:   3'- -GUCGuCUUCUGCU---------AGCACugCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 83110 0.72 0.906252
Target:  5'- gCGGCGGAAGAUGcgCGgggagcUGugGGCGAg -3'
miRNA:   3'- -GUCGUCUUCUGCuaGC------ACugCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 133708 0.73 0.879775
Target:  5'- gAGCccuuGGAccccgAGACGGagUCGUGugGACGGCg -3'
miRNA:   3'- gUCG----UCU-----UCUGCU--AGCACugCUGCUG- -5'
15856 3' -51.6 NC_004065.1 + 43274 0.73 0.872597
Target:  5'- aAGgGGggGAUGuccggCGUGGCGACGAa -3'
miRNA:   3'- gUCgUCuuCUGCua---GCACUGCUGCUg -5'
15856 3' -51.6 NC_004065.1 + 105450 0.75 0.807972
Target:  5'- uGGCGacGGACGAgaaCGUGACGGCGAa -3'
miRNA:   3'- gUCGUcuUCUGCUa--GCACUGCUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.